Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00274 ATGGCAGGTTTCTACTATCTAGGTGGAAGAGAAGGCCCACCAAGCAAACAAGACGAAGATCAAGCTGAAAGGGAGCAGAACCTGTTTCTGTACAGAAACGAGGAGATCTACAACAAAGGTTTCGAGATATGGCAGCAGTACAGTCATCAGCAACAACAAAACCAAAACTTGAGCGATCACCTGTCGTTTGGAGTGGGTCCTAGCCACCAAAGAAACTTCCTCAACATCTCCGATGAGCCGTCTAGATCGGGATTAACGGCGATTAGACAAGGAGGGTTTGGAGGAGGAATGAATTGCCAAGACTGTGGAAATCAAGCTAAAAAAGATTGCTCCCATTTGAGGTGTAGAACTTGCTGCAAGAGTCGAGGGTTTCAGTGTGATACCCACGTTAAGAGCACGTGGGTTCCTGCTGCCAAACGCCGGGAGAGACAGCTCCAGCTCTCAGGTTTGAATCCTCATGAAGAAGATCAGCAATTTTCGAAAAGGCAGAGGGACAATCAAGGAACCTCAACTTCCCTTGCTTGGTTAGAGCTGGCACAATTTCCAGCGGAGGTGAATGCTGCAGCAGTATTTCGGTGTGTGAAAGTGAGCGCTATAGATGATGTGGATGATCAGTTTGCTTATCAGACCGCGGTGAACATCGGCGGACATGTTTTCAAGGGAATTCTGTATGATCAAGGACCGGAAGGAATCTATGCCGCCGGAGGAGACAGTTCCCCAGGCCAGGGCGGAGAGGGAATCCAGCAACTCAATCTCATAACAAGAATGACTGGAAATACTTCCGCAGCTACCACTTCTAACCCATCTGCTTCATTGGTTCATGCTTCATTATATCCTCAGCTCAACTCTTTTATGGCTGGTACGCAATTCTTCCAACCTTCAAGGTCTTAA 891 47.59 MAGFYYLGGREGPPSKQDEDQAEREQNLFLYRNEEIYNKGFEIWQQYSHQQQQNQNLSDHLSFGVGPSHQRNFLNISDEPSRSGLTAIRQGGFGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCDTHVKSTWVPAAKRRERQLQLSGLNPHEEDQQFSKRQRDNQGTSTSLAWLELAQFPAEVNAAAVFRCVKVSAIDDVDDQFAYQTAVNIGGHVFKGILYDQGPEGIYAAGGDSSPGQGGEGIQQLNLITRMTGNTSAATTSNPSASLVHASLYPQLNSFMAGTQFFQPSRS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2407882 2408942 - Bda016231.1 Bda03g00274 3533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00274 296 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 180 228 IPR006511 -
Bda03g00274 296 Pfam Domain of unknown function (DUF702) 96 229 - -
Bda03g00274 296 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 98 140 IPR006510 -
Bda03g00274 296 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 293 - -
Bda03g00274 296 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 293 IPR007818 GO:0003700|GO:0006355
Bda03g00274 296 MobiDBLite consensus disorder prediction 1 23 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01519 Bda03g00274 CCT
Bda03g00274 Bda08g01246 CCT
Bda01g01519 Bda03g00274 ECH
Bda03g00274 Bda08g01246 ECH
Bda01g00510 Bda03g00274 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00274 Bda-Chr3:2407882 Bda14g00993 Bda-Chr14:8140463 2.41E-65 dispersed
Bda10g00166 Bda-Chr10:4910528 Bda03g00274 Bda-Chr3:2407882 3.21E-86 transposed
Bda01g01519 Bda-Chr1:51050589 Bda03g00274 Bda-Chr3:2407882 3.45E-116 wgd
Bda01g00510 Bda-Chr1:32082199 Bda03g00274 Bda-Chr3:2407882 4.72E-168 wgd
Bda03g00274 Bda-Chr3:2407882 Bda08g01246 Bda-Chr8:50963196 5.83E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15631 PF05142 DUF702 5.80E-62 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00274 - - jre:108991308 384.03