Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00275 ATGGCGAGGGGGAAGATTCAGATCAAGAGGATAGAGAATCTGACCAACAGGCAGGTCACCTACTCTAAGAGAAGAAAAGGGTTGTTCAAGAAGGCGGAGGAGCTCACTGTTCTCTGCGATGCTAAGGTTTCCCTCATCATGTTTTCTAGCACTGGGAAACTCCATGAATATTTCAGCCCGACTACCACTGAAAAGATGAAAATTTTAACAATCCAGTTTGTTTTTTTGTTGATCAAGGAAGTGGCAGCAGAGGAAGATCCACATTATGGACTAATCGACAGGGGAGGAGGTTGCGACTCCATTACTGGTTTCTCCAATGGAGATCCCCACGTATTTGCACTCAGACTGCAACCTAACCGACCTTATCTGGCCGGAGCAGTCCCAGATCTGCGAACTTATCCCTTGCTCGAGTAA 414 46.62 MARGKIQIKRIENLTNRQVTYSKRRKGLFKKAEELTVLCDAKVSLIMFSSTGKLHEYFSPTTTEKMKILTIQFVFLLIKEVAAEEDPHYGLIDRGGGCDSITGFSNGDPHVFALRLQPNRPYLAGAVPDLRTYPLLE 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2412161 2413581 + Bda016232.2 Bda03g00275 3534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00275 137 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda03g00275 137 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda03g00275 137 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda03g00275 137 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda03g00275 137 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 65 - -
Bda03g00275 137 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda03g00275 137 Gene3D - 13 72 IPR036879 GO:0003677|GO:0046983
Bda03g00275 137 PANTHER APETALA3 76 134 - -
Bda03g00275 137 SUPERFAMILY SRF-like 3 65 IPR036879 GO:0003677|GO:0046983
Bda03g00275 137 PANTHER APETALA3 1 65 - -
Bda03g00275 137 CDD MADS_MEF2_like 2 62 IPR033896 GO:0000977|GO:0045944
Bda03g00275 137 PANTHER SERUM RESPONSE FACTOR HOMOLOG 76 134 - -
Bda03g00275 137 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda03g00275 137 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00275 K09264 K09264; MADS-box transcription factor, plant - gmx:547720 115.931
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00508 Bda03g00275 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00275 Bda-Chr3:2412161 Bda04g00032 Bda-Chr4:528368 4.12E-31 dispersed
Bda01g00508 Bda-Chr1:32066294 Bda03g00275 Bda-Chr3:2412161 6.31E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1037 Blo01g01582 . Bda01g00508 Bda03g00275 Bpe02g00367 Bpe04g00229 Bma04g00225 Bma01g02346 . . Cma01g01941 Cma09g00125 Car01g01517 . . Cpe06g00084 . . . . . . . . . . . . . . . Cone4ag1947 . . . Lsi04g01716 Csa03g04253 Chy04g00443 . . . . . . . . . . Cmo01g02003 Cmo09g00122 . . . Car09g00110 . Cpe02g00096 . . . . . . . Cla05g01900 Cam05g2036 Cec05g2044 Cco05g2100 Clacu05g2028 Cmu05g1908 Cre05g2030 . . . Cme04g00496
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007708 1 4 0 0 0 2 1 2 2 1 1 1 1 0 1 1 2 0 0 2 1 1 1 0 1 1 0 1 3 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15632 PF00319 SRF-TF 1.50E-24 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00275 Bda_Chr03 FPKM 6.482291 9.572151 3.690793 3.080248 14.553887 17.789801 15.814421 0.890873 0.543886