Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00280 ATGGGCTCGGTTTCTCTCAAAATCGGAGATGGAACTGCCAGATTCAAGAGAGCAAGTTACTGTTCTTCAGCTCTCAACATTGTTATGCTTCTCTCTGTTATCACTACCAATCTTGTTGCTCTGTATGCTTTCACTTACTCCCCTAAAGATCAACAAAATGTTTTACTTCACCATGCCCAGAAGAACATCCCGCTGATTTCTGAACAGGTGTCTTTGATTATTCGGGAAATTGATTCCTCCCAGAAAAAGCTTGCCAAGATGGAAAAAGAGCTTATTGGGTATGAAAGCGTCGATCTTTCCAGATCCAACACTGCAAATGAACTCAAACTCTTTCTTCAACACCACCAACTCCCTCTGGGCAAAGATTCGAAAAGTGGAATCACTGAAATGGTGGCATCTGTCGGCCATTCCTGCGAAAAATCCATGGACCAGCTTTCTCAGTATATGTCTTACAAGGTTTCTGGACCTTGTCCTGATGATTGGAGCCTCGGGCAGAGGCTGATTCTGCGTGGATGTGAGCCTTTGCCGAGAAGAAGGTGTTTCGCCAAATCTGTACCAAAGGTGGGTTTCTCTCCTTTTCCTGCTTCTCTTTGGAGCCCTGTCAGTAACAAGAGCGTCACTTGGAGTGGTATTGGCTGTAAGAATTTTGAATGCTTAAATGATAGAAAATTAGGTAGAGATTGTGTTGGCTGCTTTGATTTGGCTAATGCTAATGAGAAACAGAAGTTTGTTAAAGCCAAAGGGAAGAATGATTTTCTTATAGATGATGTTTTGGCTTTGAGCAATGGTGGAATAAGAATAGGCTATGATATTGGAGGTGGGTCTGGAACATTTGCTGCAAGAATGGCAGAGAAGAATGTGACTGTCGTCACAAACACTTTGAATATCGATGCTCCATTCAGCGAATTCATTGCTGCAAGAGGGCTATTCCCCCTCTTCTTGAGTTTAGATCATCGATTTCCTTTCTACGACAACGTCTTCGACTTGATTCGCGCATCAAGTACGTTAGATGTCGGGGGAAAGCCCGAGAAATTGGAGTTCCTAATGTTCGATATCGACAGAATTTTGAGGGCCGGGGGATTGTTTTGGTTGGACAACTACTATTGTACTGATGAGGAGAAGAAGAAGAGTTTAACACGATTAATCGAGCGCTTCGGGTATAAAAAGCTGAAATGGGTGGTCGGGGAGAAGGTCGATGGAACCAAATCTGAGGTCTATTTGTCTGCTGTGCTACAAAAGCCTGTAAGAGTG 1251 43.41 MGSVSLKIGDGTARFKRASYCSSALNIVMLLSVITTNLVALYAFTYSPKDQQNVLLHHAQKNIPLISEQVSLIIREIDSSQKKLAKMEKELIGYESVDLSRSNTANELKLFLQHHQLPLGKDSKSGITEMVASVGHSCEKSMDQLSQYMSYKVSGPCPDDWSLGQRLILRGCEPLPRRRCFAKSVPKVGFSPFPASLWSPVSNKSVTWSGIGCKNFECLNDRKLGRDCVGCFDLANANEKQKFVKAKGKNDFLIDDVLALSNGGIRIGYDIGGGSGTFAARMAEKNVTVVTNTLNIDAPFSEFIAARGLFPLFLSLDHRFPFYDNVFDLIRASSTLDVGGKPEKLEFLMFDIDRILRAGGLFWLDNYYCTDEEKKKSLTRLIERFGYKKLKWVVGEKVDGTKSEVYLSAVLQKPVRV 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2463442 2464692 + Bda033478 Bda03g00280 3539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00280 417 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 1 417 - -
Bda03g00280 417 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 261 384 IPR004159 GO:0008168
Bda03g00280 417 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 1 417 - -
Bda03g00280 417 Coils Coil 70 97 - -
Bda03g00280 417 Gene3D Vaccinia Virus protein VP39 240 406 IPR029063 -
Bda03g00280 417 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 257 390 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00280 - - - csv:101215265 704.131
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01681 Bda-Chr1:52878741 Bda03g00280 Bda-Chr3:2463442 5.52E-81 dispersed
Bda03g00280 Bda-Chr3:2463442 Bda07g00945 Bda-Chr7:10985207 1.15E-56 dispersed
Bda03g00280 Bda-Chr3:2463442 Bda02g00073 Bda-Chr2:2957860 1.58E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1077 . . . Bda03g00280 . Bpe04g00236 Bma04g00237 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1960 Cone7ag1873 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009763 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00280 Bda_Chr03 FPKM 24.17383 25.138748 6.703939 7.111405 10.740566 10.197788 11.940463 3.846142 3.444885