Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00281 ATGGATTCTGTAGAAGAGAAGGTTAAGACTGGGGTCGTGGTTAATGCCACACAAACAAATCTGCTCGAGGAGATGAAGCTATTGAAAGAGATACACGATCAGACCGTTGCTCGAAAGGCCATGAGTTCAGAGTTATGGCATGCCTGCGCTGGCCCTCTCGTTTCTTTGCCTCAGATGGGGAACCTCGTTTATTACTTCCCTCAAGGGCATAGCGAGCAGGTAGCAGTTTCAACTAAAAGAATTGCAACGTCACAGATTCCAAACTATCCACATCTTTCATCTCAGCTGATGTGCCAAGTTCAAAATATAACTTTACACGCAGATAAAGATACAGATGAGATATATGCTCAAATGTGCCTCCAACCAGTGAACTCTGAAAAAGATGTTTTCCCAGTACCGGATTTTGGACTGCGGTCAGGGAAACATCCAAGCGAGTTTTTCTGCAAAACTTTGACTGCCAGTGATACTAGCACTCATGGTGGCTTCTCTGTTCCTCGAAGGGCTGCCGAAAAACTTTTTCCTCCATTGGATTTCACGATGCAACCGCCAACTCAAGAACTTGTTGTACGAGATTTGCATGACAATACATGGACTTTTCGCCATATATACAGAGGCCAGCCAAAGAGACACCTTCTGACAACAGGGTGGAGTTTGTTTGTTGGTGCAAAAAGGCTTAGAGCAGGTGACGCAGTTCTATTTATTAGGGATGAGAAAGCGCAATTGCTTGTTGGAGTGAGGCGAGCCAATAGTCAGCAAACGACATTACCATCATCTGTTCTGTCTGCTGATAGTATGCACATCGGTGTGCTAGCTGCTGCAGCTCATGCTGCTGCTAATCATTGCCCATTTACAATATTCTACAACCCAAGGGCATGCCCTTCCGAGTTTGTGATTCCTGTTGCTAAATATCGAAAATCTGTATATGGAACTCAACTTTCTGTCGGCATGAGGTTTGGAATGATGTTTGAAACAGAAGAATCAGGCAAGCGCAGATATATGGGTACATTAGTTGGCATTAGCGACGTAGATCCGTTGAGGTGGCCAGGTTCCAAGTGGCGAAATCTTCAGGTGGAATGGGATGAGCCTGGCTGTTGTGATAAACAAAATAGAGTGAGTTCATGGGAAATCGAAACTCCGGAAAGTCTCTTTATTTTTCCTTCACTAACTTCGGGTTTGAAACGACCATTACACAATGGATTTTTGGGCGAAACCGATTGGGGTAGTTTGGTTAAAAGACCTCTTCTTCGAGTCCCTGAAAATGGACATCAGAATTTTCCGTATGCAGTTTCGAGTTTATATTCTGAACAGCTGATGAAGATGCTTGTCAGGCCTCAACTTGTGAACCTTCCTAGATCTTCTTCTCTGCCCCAAGACTCAGTTTCCAAGGTCGACCAATTGTCAAATTGGAAGATCTTACAGCCTTTTAATAATCAAAAGACTAACCTCATCTCTTCGGAAAACATATCCTTGCAAAATCAAACTAATCCTTCTTCTTGCCCTGATCAATCTGACGTGCTAACTTCAATTTCATCATCAAACACTAATTTACCTGTAAAACTTGGATCTCCTTCTAGTCTCGGTGGTCAAATACTGGCTGCAGCTAATGGTGAGTGCACAAAAGTCAATTCCGAGCTCACAGCAGACCAGGTAAGCCAGTTAGCCTCTACGGGGGAGTGTAGAGAAGAAAAACTAAGCTCTGGCCATGAAAATTTGCAGAGCTATGTTAAAAATTTGCCATCTCTGAGCCAGGGTCAAACTCCATTGCCATTGCAGGCTAATGCTTGGTCTCTCCAGCCTCCGCTAGAACCATTGATGCACCTTTCTCAACCAATTGACATACCTCAATATGACTTTTCTGGTCCAACTTCCTTGCTTCCTTCTTTAGATTTCAATGGATATGTACCTAACACTTCTTACCAATCTCATTCTGTAGTAATTAGACCTTCAGGGCCTTCATCTATGGCGGGATTGCCAGACCAATTTGGACCATTTTCAGAATCATTCAACTATCCTTTACCTTTGGTGGGTCATGAATCTTGGGATAACCTCAGGTTCTTGTCCCATGCAAACCAAATGACTTTATTCTCACATGAAGATCCGTCTAGTTTGAATTGTGCGACTAATTCTAATGGTCTGCGGGATTTGTCTGATGAAAGCAACAATCAAAGTGGGATATATAGTTGTCCTAACATTGACGTTAGTAACGGTGGTAGTACTGTTCTAGATCCATCTGTTTCAAGTGCAATTCTTGATGAATACTGCACCTTAAAGGATCCTGAGTTTCAAAACCCCTCTGATTGTTTTGTTGGGAATTTCGGGTCTAGCCAGGATGTGCAGTCTCAGATTACTTGTGCCAGTCTCGGAGATTCACAGGCTCAGACTCGCCAAAACATATCTGATAACTCCGGCGGTACATCATCATGCAATCTGGATTTTGATGAGAACAGCCTTTTGCAGAACAGCTCATGGAAACAAGTAGTTCCACCCATGAGAACTTATACAAAGGTTCAGAAGGCAGGATCAGTGGGCAGATCAATTGACGTGACTAGTTTTAAGAACTACGATGAGCTGTGCTCGGCAATAGAGTGCATGTTTGGACTAGAGGGGTTGTTGATCGACCCGAGAGGGTCGGGATGGAAATTAGTATACGTAGATTATGAAAACGACGTACTTCTCGTTGGCGATGATCCCTGGGAAGAATTTGTAAGCTGTGTTAGGTGCATTAGAATCCTATCGCCTTCTGAAGTTCAACAGATGAGTGAAGAAGGTATGAAGCTCCTAAACAGCGCTATGATGCAAGGGGTTAATTGCTCCGTATGA 2820 43.48 MDSVEEKVKTGVVVNATQTNLLEEMKLLKEIHDQTVARKAMSSELWHACAGPLVSLPQMGNLVYYFPQGHSEQVAVSTKRIATSQIPNYPHLSSQLMCQVQNITLHADKDTDEIYAQMCLQPVNSEKDVFPVPDFGLRSGKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDFTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDAVLFIRDEKAQLLVGVRRANSQQTTLPSSVLSADSMHIGVLAAAAHAAANHCPFTIFYNPRACPSEFVIPVAKYRKSVYGTQLSVGMRFGMMFETEESGKRRYMGTLVGISDVDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHNGFLGETDWGSLVKRPLLRVPENGHQNFPYAVSSLYSEQLMKMLVRPQLVNLPRSSSLPQDSVSKVDQLSNWKILQPFNNQKTNLISSENISLQNQTNPSSCPDQSDVLTSISSSNTNLPVKLGSPSSLGGQILAAANGECTKVNSELTADQVSQLASTGECREEKLSSGHENLQSYVKNLPSLSQGQTPLPLQANAWSLQPPLEPLMHLSQPIDIPQYDFSGPTSLLPSLDFNGYVPNTSYQSHSVVIRPSGPSSMAGLPDQFGPFSESFNYPLPLVGHESWDNLRFLSHANQMTLFSHEDPSSLNCATNSNGLRDLSDESNNQSGIYSCPNIDVSNGGSTVLDPSVSSAILDEYCTLKDPEFQNPSDCFVGNFGSSQDVQSQITCASLGDSQAQTRQNISDNSGGTSSCNLDFDENSLLQNSSWKQVVPPMRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLIDPRGSGWKLVYVDYENDVLLVGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGVNCSV 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2465183 2469794 - Bda016239.1 Bda03g00281 3540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00281 939 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677
Bda03g00281 939 Pfam AUX/IAA family 830 918 IPR033389 -
Bda03g00281 939 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
Bda03g00281 939 Gene3D - 145 248 IPR015300 -
Bda03g00281 939 Gene3D - 828 920 - -
Bda03g00281 939 Pfam Auxin response factor 273 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bda03g00281 939 SUPERFAMILY CAD & PB1 domains 823 910 - -
Bda03g00281 939 SUPERFAMILY DNA-binding pseudobarrel domain 137 276 IPR015300 -
Bda03g00281 939 PANTHER AUXIN RESPONSE FACTOR 5 28 935 - -
Bda03g00281 939 CDD B3_DNA 146 247 IPR003340 GO:0003677
Bda03g00281 939 Gene3D - 311 383 - -
Bda03g00281 939 SMART B3_2 147 249 IPR003340 GO:0003677
Bda03g00281 939 ProSiteProfiles PB1 domain profile. 831 915 IPR000270 GO:0005515
Bda03g00281 939 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 935 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00281 Bda-Chr3:2465183 Bda12g00280 Bda-Chr12:3024876 8.67E-28 dispersed
Bda03g00281 Bda-Chr3:2465183 Bda02g00770 Bda-Chr2:48437939 2.48E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15633 PF02309 AUX_IAA 4.50E-10 CL0072 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00281 K14486 - csv:101216825 1351.27