Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00284 ATGGGTGTTCCGGCTTTCTACAGGTGGCTAGCGGAGAAGTATCCGTTGGTGGTGGCGGATGTGATCGAGGAGGAACCTGTTGTTATCGATGGAATTTCGATTCCCGTTGATACCAGTAAACCGAATCCAAACAAAATTGAATACGATAACCTCTACCTCGATATGAATGGCATTATTCACCCTTGCTTTCATCCCGAAGACAGGCCTTCTCCGACTACTTACGATGAGGTTTTCCAATGCATGTTTGACTACATTGATAGACTCTTTGTGATGGTCCGACCTCGAAAGCTGCTGTACATGGCTATTGATGGTGTTGCTCCCAGGGCCAAAATGAATCAACAGAGGTCACGACGATTTAGAGCTGCAAAAGACGCAGCAGATTCGGCAGCTGAAGAGGAGCGCTTAAGGAAAGAGTTTGAAAGCGAGGGAAGAAAGCTTCCCCCAAAAGAGGAATCACAAACTTGTGATTCGAATGTTATAACTCCTGGAACTGAATTTATGGCTGTTTTATCTATTGCTTTACAATATTACATTCACCTCAGATTAAATAGTGATCCTGGTTGGAAAAAAATTAAGGTTATCCTATCTGATGCAAATGTTCCTGGTGAAGGGGAACACAAAATAATGTCATATATTCGTCTTCAAAGAAATCTTCCCGGTTTTGATCCAAATACACACCATTGCTTGTATGGTTTGGATGCAGATTTAATTATGCTGGCGTTAGCTACCCATGAAGTTCATTTTTCTATTCTTCGTGAGATTGTATTCACCCCTGGGCAGCAAGACAAATGTTTTCTATGTGGTCAGATGGGACATTTAGCTGCAGATTGTGAAGGCAAGGCAAAGAGAAAATCTGGAGAGCTTAATGGGAAAAACGACACTGCTAATTTAGTGAAAAAACCTTATCAATTTCTCAACATATGGACCCTTAGGGAGTATTTGGAATATGAGATGAGAATACCCAACCCTCCATTTGAAATCGATCTTGAACGCATTGTTGATGATTTTATATTCATGTGTTTCTTTGTTGGCAATGACTTCTTACCTCACATGCCCACATTGGAGATCCGAGAGGGTGCCATCAACTTGCTTATTGCTGTGTACAAAAAGGAGTTTAGAGCGTTGGGTGGCTATTTGACTGAGGGATGGAAGCCAATTTTGAGCAGAGTTAGCCGTTACATTGAGGCAGTCGGATCTTATGAAGATCAAATATTTCAGAAGAGAGCTCGATTGCATAAGCGGCAAGCAGAAAGAACAAAGCGCGATAAGTCAAATGCACGGAGTTCTTATAAAAATGGACCTAGGGGGGATGATGTGGGACCTCAAATGCTACCTGACCTGTTGGTTCCCGTTGGCCGTTTTCGTGGTTCACGCCTTGCTTCGGCTCCTTCTCCTTCACCATTTCAGCTTTCAGGACGTGGCCCTTCATCCTCTGATAGAACAGCATCTGAAGATGGTCCAAGTTTTGTTCCCCCTATGAAGGTTTCCAGATCATCACATGGGACTTCTGTTGCTGCCGCTATTGTTGAAGCAGAGAATCGCCTTGAAACAGATCTGGTCGAAAATAAAGAAGAACTGAAAGTAAAGCTTAAAGAAAGACTGCGCGAGAAGTCTGATGTCTTGAACCACAAATCTCCAGAGGAAGATAAGGTCAAATTGGGAGAACCTGGGTGGAAAGAAAGATATTATGAAGAAAAATTTTCTGCTAAAACTCCCGAGGATCTTGATGCAATACGAAAAGATGTTGTTTTGAAATACACGGAAGGATTATGCTGGGTTATGCACTACTATTACGAAGGAGTCTGTTCTTGGCAGTGGTTTTATCCATATCACTATGCTCCCTTTGCCTCTGATCTTAAGGACCTTGGTGAACTCAATATATTTTTTGAGTTGGGATCTCCCTTTAAACCATTCAATCAACTTTTAGGGGTTTTCCCTGCAGCAAGTTCCCACGCGCTGCCTGAACACTATAGAAAGCTAATGACTGATCCAAACTCACCTATCATTGATTTTTATCCAACTGATTTTGAAGTGGATATGAATGGCAAACGGTTTTCTTGGCAGGGTATTGCAAAATTACCTTTCATTGATGAAACTCGTCTTCTTGCAGAAGTTAAAAAAATTGAACATACATTGACGGAGGAGGAAGTGCGAAGAAATTGTACGATGTTTGACATGCTGTTTGTGGCAACATCTCATCCTCTATCTGTTTGTATATATTCGCTTGATCACCGCTACAAACAATTGAAACACAGAGAACGTGCTGAGTTTAAGGAAAAAATAAATGCTGAATTCAGTGAAGGAATGAATGGTTATTTGTCTCCATGTGGTGGAGATCCTTGCCCTCCTATATTCAGATCTCCTGTCGAAGGAATGGAAGATATTATAGACAACCAAGTCATATGTGCTATATATAAATTGCCTGATCAGCACGCTCATATTTGTCGACCACCAATTGGAGTAAAATTTCCTCCAAAGGTTGTGACTTTGGGGGATCTGAAACCTGCTCCTGCTTTATGGCATGAGGACAATGGAAATAGATGGCCACACAGCGGAAGGGAAAACCCCGCCGGATCTATTTCAGGTCCACAGCTTGGTGACTGCTGCACGCCGACTCGTAGTAAACAGTTTACAGATCAAATCTGA 2646 42.06 MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGISIPVDTSKPNPNKIEYDNLYLDMNGIIHPCFHPEDRPSPTTYDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADSAAEEERLRKEFESEGRKLPPKEESQTCDSNVITPGTEFMAVLSIALQYYIHLRLNSDPGWKKIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTHHCLYGLDADLIMLALATHEVHFSILREIVFTPGQQDKCFLCGQMGHLAADCEGKAKRKSGELNGKNDTANLVKKPYQFLNIWTLREYLEYEMRIPNPPFEIDLERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAVYKKEFRALGGYLTEGWKPILSRVSRYIEAVGSYEDQIFQKRARLHKRQAERTKRDKSNARSSYKNGPRGDDVGPQMLPDLLVPVGRFRGSRLASAPSPSPFQLSGRGPSSSDRTASEDGPSFVPPMKVSRSSHGTSVAAAIVEAENRLETDLVENKEELKVKLKERLREKSDVLNHKSPEEDKVKLGEPGWKERYYEEKFSAKTPEDLDAIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGELNIFFELGSPFKPFNQLLGVFPAASSHALPEHYRKLMTDPNSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDETRLLAEVKKIEHTLTEEEVRRNCTMFDMLFVATSHPLSVCIYSLDHRYKQLKHRERAEFKEKINAEFSEGMNGYLSPCGGDPCPPIFRSPVEGMEDIIDNQVICAIYKLPDQHAHICRPPIGVKFPPKVVTLGDLKPAPALWHEDNGNRWPHSGRENPAGSISGPQLGDCCTPTRSKQFTDQI 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2491738 2499506 + Bda016242.1 Bda03g00284 3543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00284 881 CDD PIN_XRN1-2-like 51 314 - -
Bda03g00284 881 Pfam Zinc knuckle 263 277 IPR001878 GO:0003676|GO:0008270
Bda03g00284 881 Pfam Xrn1 helical domain 327 833 IPR041412 -
Bda03g00284 881 Coils Coil 520 540 - -
Bda03g00284 881 MobiDBLite consensus disorder prediction 117 151 - -
Bda03g00284 881 Coils Coil 122 142 - -
Bda03g00284 881 ProSiteProfiles Zinc finger CCHC-type profile. 263 277 IPR001878 GO:0003676|GO:0008270
Bda03g00284 881 MobiDBLite consensus disorder prediction 411 443 - -
Bda03g00284 881 PIRSF Exonuclease_Xrn2 1 878 IPR017151 GO:0004534|GO:0005634|GO:0006139
Bda03g00284 881 MobiDBLite consensus disorder prediction 113 155 - -
Bda03g00284 881 SMART c2hcfinal6 263 279 IPR001878 GO:0003676|GO:0008270
Bda03g00284 881 Gene3D - 1 135 - -
Bda03g00284 881 MobiDBLite consensus disorder prediction 462 484 - -
Bda03g00284 881 MobiDBLite consensus disorder prediction 845 865 - -
Bda03g00284 881 SUPERFAMILY Retrovirus zinc finger-like domains 259 284 IPR036875 GO:0003676|GO:0008270
Bda03g00284 881 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Bda03g00284 881 Gene3D - 625 722 - -
Bda03g00284 881 Gene3D - 258 288 - -
Bda03g00284 881 Gene3D - 148 374 - -
Bda03g00284 881 MobiDBLite consensus disorder prediction 459 497 - -
Bda03g00284 881 PANTHER 5'->3' EXORIBONUCLEASE 1 868 IPR027073 -
Bda03g00284 881 PANTHER 5'-3' EXORIBONUCLEASE 1 868 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00284 - - K12619 vvi:100260845 1396.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00284 Bda-Chr3:2491738 Bda12g00388 Bda-Chr12:4544861 3.32E-114 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1088 . Blo12g00889 . Bda03g00284 . Bpe04g00241 Bma04g00241 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1394 Cone20ag0439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005436 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00284 Bda_Chr03 FPKM 3.620915 1.978828 0.430927 0.795625 4.616957 5.20583 4.008766 0.757064 0.804863