Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00289 ATGCTTTTTGGCTATGCCTATCCAGCTTACGAGTGTTATAAAACTGTTGAATTGAATAAACCAGAAATTGAACAACTTCGATTTTGGTGCCAGTACTGGATTCTGGTAGCTATTTTGACTGTTGGTGAAAGAATTGGTGATGCTTTTATCTCATGGGTTCCAATGTATAGCGAAGCTAAGCTGGCATTCTTTATCTATCTGTGGTACCCTAAAACAAAGGGAACAAGCTATGTGTATGATTCCTTCTTCAAACCATACATGGCGAAGCACGAAACAGAAATTGACCGAAATTTGTTGGAACTAAGGACCAAGGCAGGGGATATCGCATTTTTATATTGGCAAAGAGCTGCAAGCTATGGTCAGACTAGAATATATGAAATTTTGCAGTATGTTGCTGCACAATCAACACCAAAGCCTCATCCTCCCCAACAGCAGCAAGGTCCAAGGATTCGCCAACATGTGCCTCCTACCCGACCACCAACAACGACTGTGGTGGAATCGGAAATACCATCATCATCATCTTCATCTTCTTCTAGCACATCTTCAAATCAGCAAAACAATGATACAGGAGAGGAGGTAGGTCCTTCTTTCGTGCCTAAACCGGCAGTCTCAGCATCTAGTTCGAATATTGAAAAGGCAGCCGCTGGGTCTGAAACAACCAGCCCATCAGCGCCAACTCAAGTAGAACCAATGCAGACGGAGCCAGTACCATCTATTGCAAATGATGAAAGCGCCAATCCTCCACCAAAAGAGACAGTCATGGAAGAAGCTATTAGGCCAACTCGGGGAAGATTGCGAAAGAACCGGTCCACTGGAAAGTAA 822 43.8 MLFGYAYPAYECYKTVELNKPEIEQLRFWCQYWILVAILTVGERIGDAFISWVPMYSEAKLAFFIYLWYPKTKGTSYVYDSFFKPYMAKHETEIDRNLLELRTKAGDIAFLYWQRAASYGQTRIYEILQYVAAQSTPKPHPPQQQQGPRIRQHVPPTRPPTTTVVESEIPSSSSSSSSSTSSNQQNNDTGEEVGPSFVPKPAVSASSSNIEKAAAGSETTSPSAPTQVEPMQTEPVPSIANDESANPPPKETVMEEAIRPTRGRLRKNRSTGK 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2519224 2520756 + Bda016246.1 Bda03g00289 3548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00289 273 MobiDBLite consensus disorder prediction 201 240 - -
Bda03g00289 273 PANTHER HVA22-LIKE PROTEIN 2 271 - -
Bda03g00289 273 PANTHER HVA22-LIKE PROTEINS 2 271 IPR004345 -
Bda03g00289 273 MobiDBLite consensus disorder prediction 136 192 - -
Bda03g00289 273 MobiDBLite consensus disorder prediction 135 273 - -
Bda03g00289 273 Pfam TB2/DP1, HVA22 family 8 86 IPR004345 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00289 K17338 REEP1_2_3_4; receptor expression-enhancing protein 1/2/3/4 - tcc:18591536 367.851
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00289 Bda-Chr3:2519224 Bda05g01138 Bda-Chr5:59584310 1.03E-58 dispersed
Bda01g00487 Bda-Chr1:31901760 Bda03g00289 Bda-Chr3:2519224 4.76E-108 wgd
Bda14g00597 Bda-Chr14:4540936 Bda03g00289 Bda-Chr3:2519224 3.59E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1095 Blo01g01595 Blo12g00886 . Bda03g00289 Bpe02g00352 Bpe04g00245 Bma04g00245 . Cmo05g00303 Cmo12g00364 Cma01g01968 Cma09g00110 Car01g01539 Car12g00391 Sed01g2489 . Cpe07g00371 Bhi04g00159 Tan02g2062 Cmetu03g2203 . Hepe10g0141 . Lcy13g1921 Cla08g01432 Cam08g1911 Cec08g1487 . Clacu08g1602 . Cre08g1387 Cone4ag1966 Cone7ag1879 Cone17ag1397 Cone20ag0084 Lsi04g01738 Csa03g04272 Chy04g00423 Cme03g01890 . . . . . . . . . Cmo01g02026 Cmo09g00106 Cma12g00413 Cma05g00300 Car05g00248 Car09g00099 Cpe11g00249 Cpe02g00075 Bhi09g02095 . . . Hepe01g1620 Mch11g0124 . Cla05g01875 Cam05g2006 Cec05g2018 Cco05g2077 Clacu05g1999 Cmu05g1880 Cre05g2003 . Csa02g02124 Chy03g01394 Cme04g00475
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001694 1 2 2 1 3 2 4 2 2 2 2 2 4 2 1 4 2 4 3 2 2 2 2 2 2 2 2 3 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00289 Bda_Chr03 FPKM 3.085158 3.778749 2.488434 2.088079 1.352899 0.0 0.0 0.0 0.79271