Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00294 ATGTCGCCTGGAAGGAAGATTACCCTGAAGAGCTCCGATGGGGAGACGTTCGAGGTTGACGAGGCTGTTGCTTTGGAATCGCTCACCATTAAACATTTGATTGAGGACGATTGTGCCGACAGTGGGATTCCACTCCCCAACGTCACCAGCAAGATCTTATCAAAGGTTATTGAGTACTGCAAGAAGCACGTCGACTCCGCTAAGTCTGAAGATCGTGCTTCTACTGCCGATGAAGATCTCAAGACTTGGGACCACGAGTTCGTCAAGGTTGATCAGGCCACGCTATTTGACCTCATCCTGGCTGCTAATTATCTGAACATCAAGAGCTTGCTAGATCTGACATGCCAGACTGTTGCCGACATGATCAAAGGAAAAACACCAGAGGAGATCCGCAAGACATTCAACATCAAGAACGACTTCACGCCTGAGGAAGAGGAGGAGGTTCGTAGGGAGAATCAATGGGCCTTTGAG 471 49.04 MSPGRKITLKSSDGETFEVDEAVALESLTIKHLIEDDCADSGIPLPNVTSKILSKVIEYCKKHVDSAKSEDRASTADEDLKTWDHEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2610458 2611916 + Bda033481 Bda03g00294 3553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00294 157 Pfam Skp1 family, tetramerisation domain 6 64 IPR016073 GO:0006511
Bda03g00294 157 PANTHER PUTATIVE-RELATED 1 157 - -
Bda03g00294 157 Gene3D Potassium Channel Kv1.1; Chain A 3 157 IPR011333 -
Bda03g00294 157 SUPERFAMILY Skp1 dimerisation domain-like 80 155 IPR036296 GO:0006511
Bda03g00294 157 SMART skp1_3 4 107 IPR001232 GO:0006511
Bda03g00294 157 PANTHER SKP1 1 157 IPR016897 GO:0006511
Bda03g00294 157 CDD BTB_POZ_SKP1 6 122 - -
Bda03g00294 157 Pfam Skp1 family, dimerisation domain 108 155 IPR016072 GO:0006511
Bda03g00294 157 SUPERFAMILY POZ domain 5 66 IPR011333 -
Bda03g00294 157 PIRSF SCF_Skp 1 157 IPR016897 GO:0006511
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00294 K03094 SKP1, CBF3D; S-phase kinase-associated protein 1 - jre:109011235 288.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00294 Bda-Chr3:2610458 Bda14g00065 Bda-Chr14:521825 3.43E-42 dispersed
Bda01g01543 Bda-Chr1:51336771 Bda03g00294 Bda-Chr3:2610458 5.61E-60 wgd
Bda14g00619 Bda-Chr14:4656836 Bda03g00294 Bda-Chr3:2610458 1.45E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1164 . . . Bda03g00294 . Bpe04g00254 Bma04g00254 . . . . . . Car12g00369 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000912 2 2 2 2 2 3 4 3 3 2 3 3 3 3 3 3 3 2 5 3 2 3 3 3 2 3 3 4 3 4 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00294 Bda_Chr03 FPKM 17.181597 19.218594 31.637232 33.395542 19.053015 15.260093 19.775616 41.393452 39.9095