Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00295 ATGGCAGCCACTGCCGATTCTTCCTCCAATCATCACTCCCCTGGTGCCTCTGGAACTTCCGCCGAAGACCTCCAGGGCCATGGATTGCGCCGGGGTAATCTACCTTCTCCCTGGGCCAAAGTCGTCCGGGGGGATTCGGAATTAATGCCAGCCGTCAATCACTCTCCTCCATCGCCGCCTTTACAGACCGCGCCGCAACTGGAGCTAACCCCTTCGTCCGATTCTTCTGTTTCGAGGATGGCTCCTTCGTCACCCCCGGAACCTACGAGTAATCCAAAGTCTAATTCTGCACCAAACTCAATTCCATCTCCACAAAGACCAAAGCGTGGTGGGAGTGGCAACTCTGCCGGTGGCCATGCACGAAGTGGCTTTCCGCCACCACCTTTTCCTGTGTTCGCTATACCTTTAAATAGTTATGGCAATCAGGTACCAATAGTGCCAGATCCTTCTCTTAGGGAAACTTCCTATAGGAGCAATAATTGGGAGCCCAGAGCTGTTGGAGCATTTGTTTCCTCAACCACAGCGTTTTTGACCCCCCAACCCATACGACCTCCCCTTGGCAGTCCCATTGCTTTTCCTGATTACGTCTATGGTCCTCCATTGCACGAACCTTTTAGAGGCGTGCCATTCATACTGCCTCCGCCAATGATATTTCCTTTTGCAGATTCTCCTTTGCCTGCCTTGATACTGGTTCAAATAGAATATTACTTCAGTGATGCTAATTTGGTAAAAGACGATTATTTAAAGTTAAATATGGATGATCAGGGATGGGTTCCAGTTTCTTTGATAGCAGGATTTCCCCGAGTTAAGAATTTAACAAACAATATCCAACTTATATTAGAGTCCTTGAGAGGTTCAACTATTGTTGAAGTACAGGATGATAAGTTAAGAAGGAGGAATGAGTGGATGAATTGGATACCATCTTCAAACCAGCTAGGCATAGATTCAGCCACTGGTGAATCAAGCAACAGTATGAACAGACTATCAACTTCTGTTCAAAAAATCACAGTGGAGGAAGGAGATAACCAAAGTACAACGATGGAGCACAAAGGCCCTGATGCTGCTGAGCCTGTTATAGACAGAACTACTGAGCTAGCTGGCCACTCACAACTTCCAAACGGAGATGTCAATGCTAGTGGATGTTCCCCTATCCATTCAAGTTTATCTGAGTAA 1173 46.97 MAATADSSSNHHSPGASGTSAEDLQGHGLRRGNLPSPWAKVVRGDSELMPAVNHSPPSPPLQTAPQLELTPSSDSSVSRMAPSSPPEPTSNPKSNSAPNSIPSPQRPKRGGSGNSAGGHARSGFPPPPFPVFAIPLNSYGNQVPIVPDPSLRETSYRSNNWEPRAVGAFVSSTTAFLTPQPIRPPLGSPIAFPDYVYGPPLHEPFRGVPFILPPPMIFPFADSPLPALILVQIEYYFSDANLVKDDYLKLNMDDQGWVPVSLIAGFPRVKNLTNNIQLILESLRGSTIVEVQDDKLRRRNEWMNWIPSSNQLGIDSATGESSNSMNRLSTSVQKITVEEGDNQSTTMEHKGPDAAEPVIDRTTELAGHSQLPNGDVNASGCSPIHSSLSE 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2614677 2618366 - Bda016253.1 Bda03g00295 3554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00295 390 MobiDBLite consensus disorder prediction 1 20 - -
Bda03g00295 390 MobiDBLite consensus disorder prediction 65 84 - -
Bda03g00295 390 MobiDBLite consensus disorder prediction 340 390 - -
Bda03g00295 390 SMART la 223 301 IPR006630 -
Bda03g00295 390 PRINTS Lupus La protein signature 232 249 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bda03g00295 390 PRINTS Lupus La protein signature 287 300 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bda03g00295 390 MobiDBLite consensus disorder prediction 93 110 - -
Bda03g00295 390 MobiDBLite consensus disorder prediction 366 390 - -
Bda03g00295 390 MobiDBLite consensus disorder prediction 1 124 - -
Bda03g00295 390 Gene3D - 220 310 IPR036388 -
Bda03g00295 390 ProSiteProfiles La-type HTH domain profile. 219 308 IPR006630 -
Bda03g00295 390 CDD LAM 229 299 - -
Bda03g00295 390 Pfam La domain 229 284 IPR006630 -
Bda03g00295 390 PANTHER LUPUS LA PROTEIN-RELATED 173 345 IPR045180 -
Bda03g00295 390 PANTHER LA-RELATED PROTEIN 1B 173 345 - -
Bda03g00295 390 SUPERFAMILY Winged helix DNA-binding domain 215 308 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00295 K18757 LARP1; la-related protein 1 - tcc:18591599 265.388
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01544 Bda03g00295 CCT
Bda03g00295 Bda08g01199 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00295 Bda-Chr3:2614677 Bda08g01182 Bda-Chr8:47493214 1.19E-43 dispersed
Bda01g01544 Bda-Chr1:51339071 Bda03g00295 Bda-Chr3:2614677 1.32E-08 wgd
Bda03g00295 Bda-Chr3:2614677 Bda08g01197 Bda-Chr8:48607925 5.74E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00295 Bda_Chr03 FPKM 17.730497 18.155613 30.295227 28.490131 14.921164 15.309349 17.342184 20.608038 29.00309