Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00299 TTCATGGCTTTGATCAGGACTAAGCCAAGTTTCCCGCACACTCTCTCTTCTCTCTCGCGGCAAGTGTGCCAGCGCTCTGCTCTTTTTTCATCCTCGTCATCTTCTTCTCTCGAAGATCATTTAGAAGATGAAGGCGGAAATGAAAATACTAACGATGCCCCTGAGACCGAGCTTTCTTCAGAGGAAACCCTAGTCGCCGACAAATTGCATGCCGTAATCAAGGACCACCATCGCAGAAACCCGACCGCCAATCCTAATATGCCTCCTTCTTCACCTGACCTGACTATTTCCGCTCTTTCACATGATTTCTCTAAAATCTCGGCCGTTCATTCCATATCTGCATCAATCGCCAGCCGCGTGATTGAGAAATGCGGCGGAGTCCGCCATGGCATCCCTTTCCTTCAAGCCCTAGCGTTCTTCAATTGGGTCACTACTCGCGAGGGGTTCGAGAACAATGTACAGCCTTATAACGAGATGGTCGACCTAGCGGGAAAGGTAAGGCAATTTGATTTAGCTTGGCATCTGATTGACTTAATGAAAGCTAGAAACGTAGAAATTACAGTAGAAACGTTCTCAATTCTTGTACGTCGGTATGTGAGAGCGGGATTAGCGGCAGAAGCTGTCCACGCCTTTAATCGTATGGAGGATTATGGTTGCAAACCTGATAAATTCGCTTTCTCCATATTAATCAGTATCCTTTGTAAGAAGAGAAGGGGAAGCGAAGCTCAATCATTTTTTGATAGGTTAAAGGATAGGTTTGAGCTTGATGTGGTTGTGTACTCTAGCTTGGTTCATGGATGGTGTCGAGCTGGTAATATTTCAGAGGCGGAGAGGGTGTTCGGGGAGATGAAGATGGCTGGCATAAAACCGAATGTGTATACTTATAGTATAGTGATTGATGGATTGTGTAGATGTGGCCAAATTACACGAGCCCATGATGTTTTAGCAGAGATGATTGATGAAAATTGTAACCCTAATGCTGTAATATTCAACAATCTAATGAGGGTTCACGTGAAGGCGGGCAGAACTGAAAAGGTATTGCAAGTGTATAATCAGATGAAGAGGATAGGTTGCCCCGCTGACATAATTACTTATAATTTCCTTATTGATAGTCATTGCAGGGATGGCAACCTTGAAGCAGCTATGAAAGTCTTTTATTCGATGATTAAGAAAGACTGCACTCCAAATGCTTCAACTGTCAATCCTATATTCAGAAGCATTGCAAAACTGCGAGATGTAAATGGTGCTCACAGGTTAATTGGTAGAATGAAAGAATCAAAATGTAAACCCAATACAGTAACCTACAATATATTGATGCAGATGTTTGCCGAATCGAAATCAGCTGATATGGTTTTGAAGTTGAAGAAGGAAATGGATGAGAATGAGGTCGAGCCTAACGTGAATACTTATAGGATTTTGATTTCGCTGTATTGTGGGATGGGGCATTGGAACAATGCCTATAATTTCTTCAGGGAGATGATTGAGGAGAAATGCTTAAAACCTGGCCAACCTGTGTATGAGATGGTTCTCCAACAATTAAGGAAAGCAGGGCAGTTGAGAAAGCACGAGGAATTAGTGGAGAAGATGATTGAGAGAGGATTTGCTGCTCGGCCACTGTAG 1620 43.15 FMALIRTKPSFPHTLSSLSRQVCQRSALFSSSSSSSLEDHLEDEGGNENTNDAPETELSSEETLVADKLHAVIKDHHRRNPTANPNMPPSSPDLTISALSHDFSKISAVHSISASIASRVIEKCGGVRHGIPFLQALAFFNWVTTREGFENNVQPYNEMVDLAGKVRQFDLAWHLIDLMKARNVEITVETFSILVRRYVRAGLAAEAVHAFNRMEDYGCKPDKFAFSILISILCKKRRGSEAQSFFDRLKDRFELDVVVYSSLVHGWCRAGNISEAERVFGEMKMAGIKPNVYTYSIVIDGLCRCGQITRAHDVLAEMIDENCNPNAVIFNNLMRVHVKAGRTEKVLQVYNQMKRIGCPADIITYNFLIDSHCRDGNLEAAMKVFYSMIKKDCTPNASTVNPIFRSIAKLRDVNGAHRLIGRMKESKCKPNTVTYNILMQMFAESKSADMVLKLKKEMDENEVEPNVNTYRILISLYCGMGHWNNAYNFFREMIEEKCLKPGQPVYEMVLQQLRKAGQLRKHEELVEKMIERGFAARPL 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2636899 2638518 + Bda016257.1 Bda03g00299 3558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00299 539 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 538 - -
Bda03g00299 539 SUPERFAMILY TPR-like 223 496 IPR011990 GO:0005515
Bda03g00299 539 Pfam PPR repeat family 256 304 IPR002885 -
Bda03g00299 539 Pfam PPR repeat family 194 235 IPR002885 -
Bda03g00299 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Bda03g00299 539 Gene3D Tetratricopeptide repeat domain 410 538 IPR011990 GO:0005515
Bda03g00299 539 Gene3D Tetratricopeptide repeat domain 248 320 IPR011990 GO:0005515
Bda03g00299 539 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 13 538 - -
Bda03g00299 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Bda03g00299 539 MobiDBLite consensus disorder prediction 33 60 - -
Bda03g00299 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Bda03g00299 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Bda03g00299 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Bda03g00299 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Bda03g00299 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 252 IPR002885 -
Bda03g00299 539 TIGRFAM PPR: pentatricopeptide repeat domain 328 361 IPR002885 -
Bda03g00299 539 TIGRFAM PPR: pentatricopeptide repeat domain 293 327 IPR002885 -
Bda03g00299 539 TIGRFAM PPR: pentatricopeptide repeat domain 469 498 IPR002885 -
Bda03g00299 539 TIGRFAM PPR: pentatricopeptide repeat domain 399 432 IPR002885 -
Bda03g00299 539 TIGRFAM PPR: pentatricopeptide repeat domain 363 397 IPR002885 -
Bda03g00299 539 TIGRFAM PPR: pentatricopeptide repeat domain 258 292 IPR002885 -
Bda03g00299 539 TIGRFAM PPR: pentatricopeptide repeat domain 433 467 IPR002885 -
Bda03g00299 539 TIGRFAM PPR: pentatricopeptide repeat domain 190 222 IPR002885 -
Bda03g00299 539 Gene3D Tetratricopeptide repeat domain 104 240 IPR011990 GO:0005515
Bda03g00299 539 Gene3D Tetratricopeptide repeat domain 321 409 IPR011990 GO:0005515
Bda03g00299 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Bda03g00299 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Bda03g00299 539 Pfam Pentacotripeptide-repeat region of PRORP 347 495 IPR033443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00299 - - - zju:107422771 806.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00299 Bda-Chr3:2636899 Bda04g00152 Bda-Chr4:4227699 3.29E-06 dispersed
Bda03g00299 Bda-Chr3:2636899 Bda11g01677 Bda-Chr11:50916385 8.03E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g164 . Blo12g00873 . Bda03g00299 . Bpe04g00260 Bma04g00261 . . . . . Car01g01561 . . . . . . . . . . . . . . . . . . . Cone7ag1913 . . Lsi04g01777 . Chy04g00393 . . . . . . Bpe14g00404 . . . . . . . . . . . . . . . . . . Cla05g01599 Cam05g1710 Cec05g1710 Cco05g1767 Clacu05g1697 Cmu05g1586 Cre05g1705 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012790 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00299 Bda_Chr03 FPKM 17.041164 19.897177 4.507463 4.088919 3.253247 2.568783 2.779015 0.472409 0.512452