Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00306 ATGGGCTCTCTTTCTGGCCTAGATGAATCATTCAACTATCCTGTCGCTCGCAGAGACGACTCTGTTGTCGATGATTACCATGGCGTCAAGATTGCCGATCCTTATCGATGGCTCGAAGATCCTGACGCCGATGAAGTAAAGGAGTTTGTTCAGGATCAAGTGGCATTGACGGAATCACTGCTTCAGAAATGCGATACAAGAGGGAAACTCCAGGAGAAACTTACCGAGCTATTCGATTATGCGCGTTATGAACCGCCATTTTGGCGCAAGGACAAGTATTTTTACTTCCATAATACAGGCCTTCAAGCACAGAGCGTCCTCTATGTTCAGGCCTTTTCCTTCCAGGATAGTTTGGATGGAGAACCTGAGATTTTGCTTGACCCCAATTCGCTAAGTGAAGATGGGACAGAAGCCCTGAACGTATATGAAGTCAGTGAGGATGCTAAGTATTTAGCTTATGGATTAAGTTCGAGTGGCAGTGACTGGGTAACAATTAAAGTAATGCGAGTCAAGGAGAAAACAGTTGAGCTGGATTCACTGTCTTGGGTAAAGTTTTCAAGCATTAGTTGGACCCATGATAGCAAAGGTTTTTTCTACAGCCGTTATCCTGCTCCCAATGAGGGAAATAATTTAGATGCTGGAACGGAGACCAACTCTAATCTTTATCATGAACTTTATTATCACTTTTTGGGAACTGAACAATCTGCTGATATTTTATGCTGGAGGGACCCTGATAACCCTAAATTCTTCGTTGGGGCTGATGTTACAGATGATGGAAAGTATGTCCTCTTGAATATTTCAGAGAGCTGCGACCCAGTCAACAAGTTGTACTACTGTGACATGTCCGCACTTCCTAATGGCCTGGAAGCCTTTCAGGAATCTGATGGTTTACTCCCTTTTGTTAAACTGATTGATGATTTTGATGCAAAATATACAGCTGTTGCAAATGACGACACCTTGTTTACTTTTCTGACAAACAAAAATGCTCCTAAGTATAAGTTAGTTTGTGTGGACTTAAATAATCCTACCGTTTGGACTGACCTTCTTCCAGAAGATGAAAAAGGTGTCTTAGAAGTTGCGTGTGCTGTTAATGGCAATCAGATGATAGTGTGTTACTTGAGCGATGTTAAATACATTCTACAGATAAGGGACTTAAAGTCCGGTTCCTTACTACATCAATTACCTATTGACATCGGCACAGTTCATGATATTTCTGCGAGAAGAGAGGACAGTTTCGTTTTTATAGGATTTTCTAGCTTTCTCACTCCTGGAATCATATACCAGTGCAATTTGGAAAGTGGCATCCCTTGCATGAAGATATTTCGTGAAATAAGTGTTCCTGGGTTTGACCGTTCAAAATTTTCCGTTGATCAGGTTTTTGTGCCTAGCAAGGATGGTACTAAGATACCAATGTTCATAGTGGCCCCGGAGAATATCCATTTGGATGGTTCAAACCCTTGTTTGTTATATGGATACGGTGGATTTAACATTAATATAACGCCATCATTTAGTGTTAGTCGAATTGTGCTCACAAGGCACTTGGATGTGGTTTATTGCATAGCGAACATTCGAGGTGGCGGTGAGTATGGGGAGGAGTGGCATAAAGCAGGCTCCCTTGCAAGAAAGCAAAATTGCTTTGATGACTTCATTGCTGCTGCTGAATATCTTGTATCCACTGGTTATACCGAACCGAGAAAGTTGTGCATTGAAGGTGGAAGCAACGGTGGGCTTCTTGTTGGAGCCTGTATAAATCAGAGGCCTGATCTTTTTGGATGTGCGTTGGCTAATGTTGGTGTCATGGATATGCTTCGGTTCCACAAGTTTACAATAGGTCATGCTTGGACTTCGGATTATGGCTGTTCTGATGATGAGGAACAGTTTCAATGGCTAATCAAGTACTCACCTCTTCACAATGTTAGAAGACCTTGGGAGCAGCATCCTGGTCAACATGTGCAGTATCCTTCTACTATGTTATTGACAGCTGATCATGATGATCGAGTTGTACCGTTACACTCCTTGAAGTTATTGGCAACCATGCAGTATATTTTATGCACCAGCGAGACAAGTCTGCAGACTAATCCAATAATTGGTCGAATTGAGTGCAAGGCAGGTCATGGAGCTGGCCGTCCAACCCGGAAAATGATAGAAGAGGCTGCCGATCGGTATTCTTTCATGGCCAAGATGTTGGCCGCATCTTGGAGAGATTAG 2208 42.66 MGSLSGLDESFNYPVARRDDSVVDDYHGVKIADPYRWLEDPDADEVKEFVQDQVALTESLLQKCDTRGKLQEKLTELFDYARYEPPFWRKDKYFYFHNTGLQAQSVLYVQAFSFQDSLDGEPEILLDPNSLSEDGTEALNVYEVSEDAKYLAYGLSSSGSDWVTIKVMRVKEKTVELDSLSWVKFSSISWTHDSKGFFYSRYPAPNEGNNLDAGTETNSNLYHELYYHFLGTEQSADILCWRDPDNPKFFVGADVTDDGKYVLLNISESCDPVNKLYYCDMSALPNGLEAFQESDGLLPFVKLIDDFDAKYTAVANDDTLFTFLTNKNAPKYKLVCVDLNNPTVWTDLLPEDEKGVLEVACAVNGNQMIVCYLSDVKYILQIRDLKSGSLLHQLPIDIGTVHDISARREDSFVFIGFSSFLTPGIIYQCNLESGIPCMKIFREISVPGFDRSKFSVDQVFVPSKDGTKIPMFIVAPENIHLDGSNPCLLYGYGGFNINITPSFSVSRIVLTRHLDVVYCIANIRGGGEYGEEWHKAGSLARKQNCFDDFIAAAEYLVSTGYTEPRKLCIEGGSNGGLLVGACINQRPDLFGCALANVGVMDMLRFHKFTIGHAWTSDYGCSDDEEQFQWLIKYSPLHNVRRPWEQHPGQHVQYPSTMLLTADHDDRVVPLHSLKLLATMQYILCTSETSLQTNPIIGRIECKAGHGAGRPTRKMIEEAADRYSFMAKMLAASWRD 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2667969 2672749 + Bda016265.1 Bda03g00306 3565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00306 735 PANTHER PROLYL OLIGOPEPTIDASE FAMILY PROTEIN 1 734 - -
Bda03g00306 735 Pfam Prolyl oligopeptidase family 501 730 IPR001375 GO:0006508|GO:0008236
Bda03g00306 735 Gene3D - 81 445 - -
Bda03g00306 735 ProSitePatterns Prolyl endopeptidase family serine active site. 548 578 IPR002471 GO:0004252|GO:0006508
Bda03g00306 735 SUPERFAMILY alpha/beta-Hydrolases 456 680 IPR029058 -
Bda03g00306 735 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 14 434 IPR023302 GO:0004252
Bda03g00306 735 PANTHER PROLYL ENDOPEPTIDASE 1 734 - -
Bda03g00306 735 SUPERFAMILY Peptidase/esterase 'gauge' domain 11 447 - -
Bda03g00306 735 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 571 591 IPR002470 GO:0004252|GO:0006508
Bda03g00306 735 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 513 537 IPR002470 GO:0004252|GO:0006508
Bda03g00306 735 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 486 504 IPR002470 GO:0004252|GO:0006508
Bda03g00306 735 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 653 675 IPR002470 GO:0004252|GO:0006508
Bda03g00306 735 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 541 560 IPR002470 GO:0004252|GO:0006508
Bda03g00306 735 Gene3D alpha/beta hydrolase 22 725 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00306 K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] - jre:109018893 1238.79
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00306 Bda11g00953 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00306 Bda-Chr3:2667969 Bda07g01486 Bda-Chr7:27610352 2.03E-25 dispersed
Bda03g00853 Bda-Chr3:7382311 Bda03g00306 Bda-Chr3:2667969 7.30E-07 transposed
Bda14g00471 Bda-Chr14:3384648 Bda03g00306 Bda-Chr3:2667969 4.19E-56 transposed
Bda14g01222 Bda-Chr14:12322918 Bda03g00306 Bda-Chr3:2667969 7.97E-18 transposed
Bda11g00953 Bda-Chr11:9310460 Bda03g00306 Bda-Chr3:2667969 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g141 Blo01g01617 Blo12g00866 . Bda03g00306 Bpe02g00328 Bpe04g00268 Bma04g00270 Bma01g02391 . . Cma01g01994 Cma09g00073 Car01g01566 . . Cpe06g00040 . . . . . . . . . . . . . . . . . . Cone20ag0048 Lsi04g01788 Csa04g02679 . . . . Bda11g00953 . . . . . Sed13g2170 Cmo01g02056 Cmo09g00074 . . . Car09g00064 . Cpe02g00051 Bhi09g02937 Tan01g5069 Cmetu07g0799 . Hepe01g2316 Mch11g0077 . Cla05g01584 Cam05g1692 Cec05g1695 Cco05g1742 Clacu05g1681 Cmu05g1572 Cre05g1689 . . Chy07g00370 Cme07g00079
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005910 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00306 Bda_Chr03 FPKM 2.435682 2.767176 0.916916 0.46682 1.748279 2.332721 2.882282 4.704133 4.645041