Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00313 ATGGGAGGAGCTCGGGCTCAAGTGAATAAATCTCATAAATCTCGTTTCTCTTCTAAGGCTACTCGGCAACAGCATAAAACCTCTTTGCAAGGTGAAAAAAGCAAGGCTTTCAAGTCTGACCGAAATGTTGTCAAGGGAGCTCGGGCTGCCCGCATTCAGCGTAGTAAGATGCTGCGGGAGCAAAAAAGAGCTTTACTTTTGAAAGAAAAAAGGGCTTCTTGTGGATCATCAAGTTCCCCGCGTGTTATTGTTCTTTTCGGGCTTGCTTCTTTTGTGGACATCGATTCTCTTGCAGTGGATCTTTTGTCATTATTATCTCCTGGGGGTGCCTCATCGTCAACTGTTGCTTCCTCTGACTACAAACTCAGGACAACAATTCTGAAAGCACCTCATGGAGATTTACTAACCTGCATGGAGATGGCCAAGGTTGCTGATTTAATTGCTTTTGTGGCTTCCGCTAGTACTTTGTGTGAAGAAAGCACATCTTACTACATGGACTCATTTGCAAGTCAATGTCTTTCTGTATTGCGGTCACTTGGATTACCAAACACTGCTGTACTTATTCGTGATTTACCTACTGACATGAAAAGGAAGCATGAATTGAAGAAATTGTGTATTTCTAGCATTACTTCTGAATTTCCTGAAGATTGTAAGTTTTGTCCTGCAGATTCTAAAGATGAGTTGCACAAGTTCATGTGGCTTTTCAAGGAACAAAGGTTGATGCCCCCTCATTGGAGAAATCAACGGCCATACCTAATGTCTCATAAGGTTGATAAAGTAGCTGATGAATGTTCTTCCGGAAAATGCACGCTTCTCCTTACTGGTTATTTGCGTGCTCAAAGTCTCTCAGTGAACCAGTTGGTTCATGTTTCTGGAGGAGGAGATTTTCAGATGTGCAAAATTGAAATTCTCAAGGATCCTCATCCTCTGAACTCAAGAAAAGAACAGGACTATATGGAATCTGATGATGGAGAGGTCATAAGGTCAATTGTTCCAAATCCTTTGAAGCAGGAGAGTTTACTTGTTGAGAATATTCCTGATCCACTTGCTGGAGAGCAGACATGGCCAACTGAGGCAGAAATGGCTGAGGCTGATAGAGAAGGGAAAGAAAAGCCTCAGAGGAGGAAACTTCCTCGTGGTACTTCTGATTACCAGGCTGCTTGGATTTTAGATGAGACAGATGATGAGTCAGATACTGTCGATGGAGATGATAATGGAATGGTATTGGATGAAAGAGGGGGAGATTTTATTGATCAAGATGATGCATATCAATCTGACCTCAGTGAGGACCAAAGTTTCCTAAATTTGAAGGATTCCGATGTGGAAACAGATATTGATTCTGTGATGATGGAAGGGGAAAACTTAACCCAAGAGCAGATTAAGGACGAGATTCAAAAAATAAAAGATGAACATGCTGAAGACGAGGAATTCCCGGATGAAGTTGACACGCCATTAGATGTTCCTACCAGGAAACGTTTTGTCAAGTATAGAGGTCTCAAATCATTTAGGACGTCTACATGGGATCCCAAGGAATCTCTACCTCCAGAGTTCGGCAGAATTTTCGCCTTTGATAACTTTGTGAGAACACAGAAGCATGTTCTAGCTAAGGCTTTGGGTATGGAGCAAGAGATTAGGGATGACTGTGTACCACCGAGCTCATACGCCAGACTGCATGTGAAAGAAGTGCCAATAGATGTTGCTTCCAAATTATGTGCACTAGCAAAGGTTATGCCAGTTACAGTGTGTGGCCTTTTGCAGCACGAGTCTAAGATGTCTGTCCTCCATTTCAGGTACTTTTGCTGTGGCTATTCTTCTCTTGTTAACTATATTAATGCAGGTGTTGATAATGCTGTGGGAGTTTCTGTTTTTCGCGTTCCGACTAATGGAGGGAGACCCAGTCATGATCTTTGGCGTTCCAGAAATTTCAAGTTCTTCTATGGATGCAGTAATGCTAGCAATACGTTTCCAAAAGCGGAAGCCATCACACATCCTAACCGATATTTGTTGATAGCAACTAGTGGAGGTTTGAATCAACAAAGAACTGGGATTACAGATGCTGTTGCTGCTGCCCGTATATTAAATGCTACTCTAGTTGTTCCTAAGCTGGATCAGAAGTCCTTTTGGAAGGATTCCAGTAACTTTTCAGAGATCTTTGATGTTGATTGGTTTATATCATTCCTGTCAAAAGATGTAAAAGTCATTAAGCAGCTCCCAAAAAGGGGAGGAGAAACATGGATTACACAAACAATGCGCGTTCCAAGAAAATGTAGTGAAAGATGTTATCAGAATCGTGTATTACCTGTTCTTTTGAAAAGGCATGCTATTCAGCTCACTAAGTTTGATTATAGACTTGCCAACAAGCTACAGACAGATTTACAGAAACTGAGATGCAGAGTCAACTACCATGCTTTACAGTTTACTAAACCAATACTTAAAATGGCTAAAAAGTTGGTTAATCGGATGAGGATGAGAAGCAAGCATTATATTGCATTGCACCTGAGGTTTGAACCAGACATGCTTGCCTTTTCAGGTTGTTATTATGGTGGAGGAGAAAAGGAAATAAAAGACCTCAGTGCAATACGCAAACGATGGAAAACTTTGCATAGTTGCAGTAACATGACTTTGCAGATACGTAATCCGGACAAGGAAAGGAGACAAGGAAAATGCCCCCTGACTCCAGAGGAAGTTGGTCTGATGCTGAGAGCACTGGGATATGGTAGTGATGTCCATATCTACGTGGCATCTGGAGAAGTGTATGGAGGAGACGAGACATTGGCCCCTTTAAGAGCACTATTTCCTAATTTCTATTCGAAAGAGACCCTAGCCTCAAAGGAGGAGTTGAAACCATTTTTATCATTTTCTTCTCGCATGGCTGCACTTGATTTTATAGCTTGTGATGAAAGTGATGTTTTTGTTACCAACAACAATGGTAATATGGCTAGAATTCTAGCAGGAAGAAGGAGATACTTTGGGCATAAACCTACTATTCGTCCAAATTCAAAAAAACTTTATAGGTTATTCTTGGGTAAAGAAAATTCAACATGGGAAGCATTTTCCTCTAAAGTTCGAAGTTACCAAAGAGGTTTCATGGGAGAGCCAAAAGAAATGCGAGCCGGCAGAGGTGAGTTTCATGAGAATCCATCATCCTGTATTTGTGAAGATTCTGCAGACAAGGAAAAGAGCGATTGGGAGAGTAAAAAATTTGGTAGGGATGGAGCAACAGATGATATGACAAATAGCGAGCAGAACATGGATGATGAGCTAGAGTTGGGCGATCCAGATGAGGAAGATCAAGTAGATCCTCCAGAGAAAGCTTTGTTCAATGCAACTAGTGTGGATTATGATGCAATTAACTCGGAGGAACCAGAGTTGGAAGAGATGCTTTCAGACTAA 3393 41.47 MGGARAQVNKSHKSRFSSKATRQQHKTSLQGEKSKAFKSDRNVVKGARAARIQRSKMLREQKRALLLKEKRASCGSSSSPRVIVLFGLASFVDIDSLAVDLLSLLSPGGASSSTVASSDYKLRTTILKAPHGDLLTCMEMAKVADLIAFVASASTLCEESTSYYMDSFASQCLSVLRSLGLPNTAVLIRDLPTDMKRKHELKKLCISSITSEFPEDCKFCPADSKDELHKFMWLFKEQRLMPPHWRNQRPYLMSHKVDKVADECSSGKCTLLLTGYLRAQSLSVNQLVHVSGGGDFQMCKIEILKDPHPLNSRKEQDYMESDDGEVIRSIVPNPLKQESLLVENIPDPLAGEQTWPTEAEMAEADREGKEKPQRRKLPRGTSDYQAAWILDETDDESDTVDGDDNGMVLDERGGDFIDQDDAYQSDLSEDQSFLNLKDSDVETDIDSVMMEGENLTQEQIKDEIQKIKDEHAEDEEFPDEVDTPLDVPTRKRFVKYRGLKSFRTSTWDPKESLPPEFGRIFAFDNFVRTQKHVLAKALGMEQEIRDDCVPPSSYARLHVKEVPIDVASKLCALAKVMPVTVCGLLQHESKMSVLHFRYFCCGYSSLVNYINAGVDNAVGVSVFRVPTNGGRPSHDLWRSRNFKFFYGCSNASNTFPKAEAITHPNRYLLIATSGGLNQQRTGITDAVAAARILNATLVVPKLDQKSFWKDSSNFSEIFDVDWFISFLSKDVKVIKQLPKRGGETWITQTMRVPRKCSERCYQNRVLPVLLKRHAIQLTKFDYRLANKLQTDLQKLRCRVNYHALQFTKPILKMAKKLVNRMRMRSKHYIALHLRFEPDMLAFSGCYYGGGEKEIKDLSAIRKRWKTLHSCSNMTLQIRNPDKERRQGKCPLTPEEVGLMLRALGYGSDVHIYVASGEVYGGDETLAPLRALFPNFYSKETLASKEELKPFLSFSSRMAALDFIACDESDVFVTNNNGNMARILAGRRRYFGHKPTIRPNSKKLYRLFLGKENSTWEAFSSKVRSYQRGFMGEPKEMRAGRGEFHENPSSCICEDSADKEKSDWESKKFGRDGATDDMTNSEQNMDDELELGDPDEEDQVDPPEKALFNATSVDYDAINSEEPELEEMLSD 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2700301 2711620 - Bda016273.1 Bda03g00313 3572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00313 1130 MobiDBLite consensus disorder prediction 1036 1130 - -
Bda03g00313 1130 MobiDBLite consensus disorder prediction 1 40 - -
Bda03g00313 1130 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 481 597 IPR007034 -
Bda03g00313 1130 Pfam AARP2CN (NUC121) domain 227 307 IPR012948 GO:0005634|GO:0042254
Bda03g00313 1130 MobiDBLite consensus disorder prediction 360 378 - -
Bda03g00313 1130 Coils Coil 450 470 - -
Bda03g00313 1130 MobiDBLite consensus disorder prediction 360 382 - -
Bda03g00313 1130 MobiDBLite consensus disorder prediction 1080 1099 - -
Bda03g00313 1130 CDD O-FucT_plant 667 995 IPR024709 -
Bda03g00313 1130 Pfam GDP-fucose protein O-fucosyltransferase 667 989 IPR019378 -
Bda03g00313 1130 PANTHER O-FUCOSYLTRANSFERASE 16 607 1130 - -
Bda03g00313 1130 MobiDBLite consensus disorder prediction 26 40 - -
Bda03g00313 1130 MobiDBLite consensus disorder prediction 1051 1074 - -
Bda03g00313 1130 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 79 241 IPR030387 -
Bda03g00313 1130 SMART DUF663_2 480 741 IPR007034 -
Bda03g00313 1130 PANTHER O-FUCOSYLTRANSFERASE 16 607 1130 - -
Bda03g00313 1130 SMART aarp2cn2 227 308 IPR012948 GO:0005634|GO:0042254
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00313 K14799 TSR1; pre-rRNA-processing protein TSR1 - cpap:110818102 856.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00313 Bda11g00961 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00313 Bda-Chr3:2700301 Bda03g01293 Bda-Chr3:27802672 0 dispersed
Bda13g01747 Bda-Chr13:40802982 Bda03g00313 Bda-Chr3:2700301 4.97E-45 dispersed
Bda11g00961 Bda-Chr11:9379605 Bda03g00313 Bda-Chr3:2700301 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g116 Blo01g01624 Blo12g00860 . Bda03g00313 Bpe02g00318 Bpe04g00274 Bma04g00281 Bma01g02399 . . Cma01g02008 Cma09g00062 Car01g01577 . . Cpe06g00029 . . . . . . . . . . . . . . . Cone4ag2012 Cone7ag1927 . Cone20ag0032 Lsi04g01798 Csa04g02692 . . . . Bda11g00961 . . . . . . Cmo01g02066 Cmo09g00063 . . . Car09g00054 . Cpe02g00041 Bhi09g02913 . . . . . . Cla11g01817 Cam11g1883 Cec11g1906 Cco11g1915 Clacu11g2047 Cmu11g1852 Cre11g2257 . . Chy07g00383 Cme07g00064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007063 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 2 2 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00313 Bda_Chr03 FPKM 17.459183 24.453993 11.989581 12.680266 15.715358 15.700132 15.029573 13.75125 22.496216