Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00320 ATGGCCGATGGAATCTTTTCGGCAGTTACCGTGCTTGATGCTTCGTCAGATTCAGTCATGGATCTTGATTACATTGATGAACTGCTATTAGAATGTTGCTGGTTCGAAACAGCAGATGGATCTGAATTTCTTCCCAGAACTCCTTCAATTTCTTCTTCCCTTTTTGAGCCTTATTCATTCAGGTGGTCGGTTCCAGAGATAAACGGAAATTCAAGCTCGATTCCACCTCCAAATAACGATCAAAACCAACGTAACGTAAGGGGCTCAGTCTCGACTATGAATCAGAAGACAATCGACGATTCCAGATGCTTAACCGATAAGTGTTTGATCGAAAACGACGAACTGCAAAAACGATGGTCGCTTTCTCCCAGGACATTTCTAGGCCCATCTTCAGTTATAGAGAGATTGATCAAGGCAGTAAAGTATATCAAAGAATTTGTGAGAGATAAAGATGTTCTAATCCAAGTTTGGGTGCCAGTAAATACCGAGGGAAGAATGGTTCTCACGACGAATGACCTTCCATTTTCAGTAAACGCAGGCTGCTCGAGGCTCGCGAAATACCGGGATATCTCGATGAGATATCAGTTCTCGGCCGAGAAGGATTCTAAGGATGTGGTTGGATTGCCAAGCCGGGTTTTTATCCGGAAGGTTCCGGAGTGGACGCCTGACGTTACATTCTTCCGGAGCGATGAGTATCCGAGACTTACCTTCGCTCAACAGTGCGATGTCCGTGGATCTCTAGCCCTTCCGGTCTTTGAACGAGGCAATAAATCTTGCTTGGCCGTCATTGAAGTTGTCTGGACTTCTCGACAGATCAAATATGTCCAGGAGCTCGAAAGTGTTTGCAAGGCTCTTGAGGCTGTTAATCTCAGGAGTTCTGATGCTTTGGGCGTTCCAAATTCAAAGCTCTCCGACTGTTTCTCGTATGGCGAAGTTGAGTTTTTCGTATTGGCAGAGACTCACTCAGTTTTGAGATTTGCATGCGAAACTCATCGATTGCCCTTAGCCCAGACTTGGGCGCCATGCGTACAACAAGGCCGAGAGGGTTGCCGCCATTCGGACGAGAATTACGTTTGCTGTGTTTCTACTGTCGATCGGGCTTGTTTTGTGGCCGATCCTAACGTAGGGCCGTTTCACGAGGCTTGCTCGGAATATCATTTACTCAAAGGGCAAGGTGTCGTTGGGGAAGCATTTACGACTCATAAACCTTGTTTCTCGAGTGACGTTAGACTATATGGCAATACGGAATATCCTCTATCTCACCATGCGAGGATGTTTAATTTGTCGGCTGCCTTTGCAATCCGCCTTCGAAGCCTTCATGCTAGTAACGCCGCCGACTTTGTTCTCGAGTTCTTCTTGCCCGTTACTTGCACAGATCCTGAAGAACAGAGAAACATGCAGTCTTCATTGTTGATGATTATACAACAGTCTATCCGGAGCTTACGACTCGTAACAGACAAGGAACTCGAAGAGGAAGGTCGCGCTCCCTTTGCTATACAAGAAATTCCGCAGGTCCAACAGTGCGATATTGATTTAAACGTGGAAGATTATAGTCTAAAAGAAGCTGTCGACGGTAACGAGTGTTTCAACTTCGGCGAGGGGAGCTCGTTAGCCGTGGGCGGTGGAAAGACCGGGGAGAAAAAGCGGACTAAGGCAGACAAAGCTATCACTTTACAAGTACTTCGGCAGTATTTTGCTGGGAGCTTAAAAGATGCAGCGAAGAGCATCGGAGTTTGTCCGACGACATTGAAAAGAATTTGCCGACAACATGGGATTAAACGATGGCCGTCGAGAAAAATCAAGAAGGTTGGTCATTCGCTGCAGAAACTCCAGCGCGTAATTGATTCGGTAGAAGGCGCATCTGGTACTTTTCAAATTGGTTCCTTGTATTCTAACTTTCCGGAGATAGCTTCGCCAACTTTATCCAGAAAGTCGTCGTTTTTAGCTTCTAAAATGAATGATTGTCCAAAGGCGTCTACCGTCCAGCGAGAAGGAAGCGTCGCCAACCTCCAAGGTGCTGCGTCGAAATCGGCCTCCTCTTCATGCAGCCAGGGTTCCAGTTCGAGCCTCTGTTGTTCAAGTCGAAGCCTCCAGTTTCCACCGTCTTGGCATGAAACCGGTAACGAAGACCCTAACGCTGGAGAAAACTCCGGCGATGGTGAGCTGAAAAGGGTCAAAAGTGAAGCGGAGCTCCTTGTCCCTAGTCAAGAGGGAATGTATTTTCCGAGATCGCAGAGCCAAGGAACGCTTAGTGAACACCTTGGCGCTGACAATTCGCTGCGCGGTGCAAAAGACAGTGGAAGGACATCTGAAGAAGATGACTCTTTGAGGGTAAAAGTCACCTATGGAGACGAAAAAATCCGGTTGAAAATGTATAAAAATCAAGGATTCCGAGAGTTACTCAACGAAATCGGTCGGCGATTTCAGATCAGCGACACCAGTAAGTTTGACCTCAAGTATTTGGATGATGATTCTGAGTGGGTCTTACTAACATGCGATGCAGATTTGGAGGAATGCATCCATGTGTATAAACAATCTGAATCGCTGAATCAAACAATCAAACTTTCCCTTCAACTTTCTCGATTCAGAAATTCTCTCGGTAGCAATGACCTCTCACAGTTGTAA 2625 46.4 MADGIFSAVTVLDASSDSVMDLDYIDELLLECCWFETADGSEFLPRTPSISSSLFEPYSFRWSVPEINGNSSSIPPPNNDQNQRNVRGSVSTMNQKTIDDSRCLTDKCLIENDELQKRWSLSPRTFLGPSSVIERLIKAVKYIKEFVRDKDVLIQVWVPVNTEGRMVLTTNDLPFSVNAGCSRLAKYRDISMRYQFSAEKDSKDVVGLPSRVFIRKVPEWTPDVTFFRSDEYPRLTFAQQCDVRGSLALPVFERGNKSCLAVIEVVWTSRQIKYVQELESVCKALEAVNLRSSDALGVPNSKLSDCFSYGEVEFFVLAETHSVLRFACETHRLPLAQTWAPCVQQGREGCRHSDENYVCCVSTVDRACFVADPNVGPFHEACSEYHLLKGQGVVGEAFTTHKPCFSSDVRLYGNTEYPLSHHARMFNLSAAFAIRLRSLHASNAADFVLEFFLPVTCTDPEEQRNMQSSLLMIIQQSIRSLRLVTDKELEEEGRAPFAIQEIPQVQQCDIDLNVEDYSLKEAVDGNECFNFGEGSSLAVGGGKTGEKKRTKADKAITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQRVIDSVEGASGTFQIGSLYSNFPEIASPTLSRKSSFLASKMNDCPKASTVQREGSVANLQGAASKSASSSCSQGSSSSLCCSSRSLQFPPSWHETGNEDPNAGENSGDGELKRVKSEAELLVPSQEGMYFPRSQSQGTLSEHLGADNSLRGAKDSGRTSEEDDSLRVKVTYGDEKIRLKMYKNQGFRELLNEIGRRFQISDTSKFDLKYLDDDSEWVLLTCDADLEECIHVYKQSESLNQTIKLSLQLSRFRNSLGSNDLSQL 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2741407 2744307 + Bda016280.1 Bda03g00320 3579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00320 874 MobiDBLite consensus disorder prediction 702 722 - -
Bda03g00320 874 ProSiteProfiles RWP-RK domain profile. 542 623 IPR003035 -
Bda03g00320 874 SUPERFAMILY CAD & PB1 domains 766 847 - -
Bda03g00320 874 MobiDBLite consensus disorder prediction 734 774 - -
Bda03g00320 874 CDD PB1_NLP 776 858 IPR034891 -
Bda03g00320 874 ProSiteProfiles PB1 domain profile. 775 856 IPR000270 GO:0005515
Bda03g00320 874 SMART PB1_new 775 860 IPR000270 GO:0005515
Bda03g00320 874 ProSiteProfiles FERM domain profile. 774 874 IPR000299 GO:0005856
Bda03g00320 874 PANTHER PROTEIN NLP8 532 863 IPR045012 GO:0003700
Bda03g00320 874 MobiDBLite consensus disorder prediction 739 754 - -
Bda03g00320 874 Gene3D - 771 856 - -
Bda03g00320 874 PANTHER PROTEIN NLP8 17 497 IPR045012 GO:0003700
Bda03g00320 874 Pfam RWP-RK domain 556 603 IPR003035 -
Bda03g00320 874 Pfam PB1 domain 776 857 IPR000270 GO:0005515
Bda03g00320 874 PANTHER PROTEIN NLP4 532 863 - -
Bda03g00320 874 PANTHER PROTEIN NLP4 17 497 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00320 - - - csv:101217375 896.345
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00320 Bda11g00974 CCT
Bda03g00320 Bda11g00974 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00320 Bda-Chr3:2741407 Bda06g00162 Bda-Chr6:2337739 4.83E-146 dispersed
Bda11g01641 Bda-Chr11:50386533 Bda03g00320 Bda-Chr3:2741407 7.89E-11 transposed
Bda11g00974 Bda-Chr11:9496242 Bda03g00320 Bda-Chr3:2741407 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g95 Blo01g01637 Blo12g00853 . Bda03g00320 Bpe02g00307 Bpe04g00281 . Bma01g02411 . . Cma01g02014 Cma09g00053 Car01g01583 . . Cpe06g00022 . . . . . . . . . . . . . . . Cone4ag2020 Cone7ag1936 . Cone20ag0023 Lsi04g01806 Csa04g02701 . . Blo17g00903 . Bda11g00974 . . . . . Sed01g2434 Cmo01g02071 Cmo09g00055 . . . Car09g00046 . Cpe02g00035 Bhi09g02885 Tan01g5108 Cmetu07g0208 . . Mch11g0056 . Cla11g01823 Cam11g1889 Cec11g1914 Cco11g1922 Clacu11g2054 Cmu11g1859 Cre11g2265 . . Chy07g00393 Cme07g00054
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003158 2 5 3 1 2 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 4 4 2 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15636 PF00564 PB1 3.10E-19 CL0072 Bda TF