Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00324 ACAATGGAGTGCCAGAATCAGCAACAAAACCGATCAGAGCAACTACCAATGCAAATGCCAATTGATCATCAGTTGCAGAACCCCGATGGGTTGTTCGTAAAGGTGATGACGGACGAACAAATGGAGCTTCTCCAGCGGCAGATCTCCGTCTATGCTTCCATTTGTGAACAGCTTGTCGAGATGCACAAGGCTATGACCGCCCAACAGGACCTTACTGGTATGAAACCGGGGAATCTATATTATGATCCAATGACGGCATCTAGTGGGCACAAGATTACGGCTCGGCAAAGGTGGACGCCAACGCCGATGCAGCTTCAAATACTCGAACATATTTTTGACAAAGGAAATGGCGCTCCAAGTAAGCAGAAGATTAGGGAGATAACTATCGACCTTTCACAACACGGGCAAATCTCGGAAGCAAATGTGTATAATTGGTTCCAGAACAGAAGAGCACGCAGTAAAAGAAAGCAGTCAGCTTCAATCCCTAACAATGCAGATTCAGAAGTGGAAACAGAAGTAGAGTCTCCAACGGAAGTGGGTGTCCAATCATTTGAGAATCATGCACATAGAAGTGGTGATGTCTACGGGAAATCCGAGTTAGGCGATGAAATGCAACCTGTTTTTCACTTGAGATCTTGTAACTCAGACCCTATGAGTGCCATGCCAAATCAGAGTACGTATTCTCATGCATTAAAATCCATTTCTTTGGGTTGTATAAAGCATTCTATGTTTTCCAAACTATACTATCGTTGA 753 44.22 TMECQNQQQNRSEQLPMQMPIDHQLQNPDGLFVKVMTDEQMELLQRQISVYASICEQLVEMHKAMTAQQDLTGMKPGNLYYDPMTASSGHKITARQRWTPTPMQLQILEHIFDKGNGAPSKQKIREITIDLSQHGQISEANVYNWFQNRRARSKRKQSASIPNNADSEVETEVESPTEVGVQSFENHAHRSGDVYGKSELGDEMQPVFHLRSCNSDPMSAMPNQSTYSHALKSISLGCIKHSMFSKLYYR 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2762501 2764027 + Bda016284.1 Bda03g00324 3583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00324 250 SUPERFAMILY Homeodomain-like 94 159 IPR009057 -
Bda03g00324 250 Pfam Homeodomain 95 155 IPR001356 GO:0003677
Bda03g00324 250 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 222 IPR044559 GO:0003700
Bda03g00324 250 MobiDBLite consensus disorder prediction 153 172 - -
Bda03g00324 250 Gene3D - 97 160 - -
Bda03g00324 250 SMART HOX_1 93 160 IPR001356 GO:0003677
Bda03g00324 250 ProSiteProfiles 'Homeobox' domain profile. 91 156 IPR001356 GO:0003677
Bda03g00324 250 PANTHER - 2 222 - -
Bda03g00324 250 CDD homeodomain 95 157 IPR001356 GO:0003677
Bda03g00324 250 MobiDBLite consensus disorder prediction 157 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00324 - - - bhj:120085747 271.166
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00324 Bda11g00976 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00324 Bda-Chr3:2762501 Bda11g01811 Bda-Chr11:53266261 1.23E-74 dispersed
Bda05g00996 Bda-Chr5:58390582 Bda03g00324 Bda-Chr3:2762501 4.20E-06 dispersed
Bda04g00024 Bda-Chr4:387129 Bda03g00324 Bda-Chr3:2762501 3.68E-10 transposed
Bda11g00976 Bda-Chr11:9505207 Bda03g00324 Bda-Chr3:2762501 2.81E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00976 CCT 1 216 Wox Gene Family AT4G35550 54.5 2.0e-59 226.1
Bda11g01811 . 1 176 Wox Gene Family AT4G35550 61.9 1.7e-53 206.5
Bda03g00324 CCT 30 178 Wox Gene Family AT4G35550 67.8 2.9e-53 205.7
Bda11g00976 CCT 32 170 Wox Gene Family AT1G20700 57.2 8.8e-39 157.1
Bda08g01367 BCT,CCT,ECH 71 217 Wox Gene Family AT1G46480 66.0 1.4e-49 193.0
Bda01g01609 . 1 146 Wox Gene Family AT1G46480 64.6 3.3e-48 188.3
Bda08g01367 BCT,CCT,ECH 71 217 Wox Gene Family AT1G46480 66.0 1.4e-49 193.0
Bda01g01609 . 1 146 Wox Gene Family AT1G46480 64.6 3.3e-48 188.3
Bda11g00976 CCT 1 216 Wox Gene Family AT4G35550 54.5 2.0e-59 226.1
Bda11g01811 . 1 176 Wox Gene Family AT4G35550 61.9 1.7e-53 206.5
Bda03g00324 CCT 30 178 Wox Gene Family AT4G35550 67.8 2.9e-53 205.7
Bda11g00976 CCT 32 170 Wox Gene Family AT1G20700 57.2 8.8e-39 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15638 PF00046 Homeodomain 6.80E-17 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00324 Bda_Chr03 FPKM 3.370392 2.939331 6.017856 5.873241 7.288418 6.765449 7.713532 4.790401 5.296257