Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00332 ATGACTCGTCCTTTTAGGCTTCTAACCGGTGGTGCGAACTCCCCGGCGAGCGACGACCATTGGCCTATACCTGATCCGAACGACTCCGACATCGTAATCGTACTCGCCGCTCTTCTCTGTGCCTTAATTTGCGTTCTGGGTCTCATAGCCGTCGCTCGTTGCACCTGGATTCGCCACCTCTCCGGCAGCGGTGGCTCAGCTCCCGCCTCCACCAACCGTAATCCTCCGGCGCCCACATCAAACAAAGGGCTTAAGAAGAAAATTTTAAGGTCTCTCCCAAAAGTCACTTTCACAGCAGAGTCCGAGTCTCATCTATCAGACTGCGCGATCTGTCTTGCCGATTTCGTCACCGGGGACGAAATCAGAGTTCTTCCGCAGTGCGGCCATGTCTTCCACGTGGGCTGCATCGATACGTGGTTCGGATCACATTCCTCCTGCCCATCTTGCCGAAAGGTTTTGGCGGTATCTAGGTGCCAGAAGTGCGGCGATTTCTCTGCGAGCTCAAGCACTGGTTCGGCAAGTGAAGCCAGATTGAAGGAGACGCAAGACAATGCAAATAGGTTCTTACCCTAG 573 54.28 MTRPFRLLTGGANSPASDDHWPIPDPNDSDIVIVLAALLCALICVLGLIAVARCTWIRHLSGSGGSAPASTNRNPPAPTSNKGLKKKILRSLPKVTFTAESESHLSDCAICLADFVTGDEIRVLPQCGHVFHVGCIDTWFGSHSSCPSCRKVLAVSRCQKCGDFSASSSTGSASEARLKETQDNANRFLP 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2799378 2799950 - Bda016292.1 Bda03g00332 3591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00332 190 MobiDBLite consensus disorder prediction 164 190 - -
Bda03g00332 190 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 184 - -
Bda03g00332 190 SMART FANCL_C_2 104 158 - -
Bda03g00332 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 155 IPR013083 -
Bda03g00332 190 Pfam Ring finger domain 107 150 IPR001841 -
Bda03g00332 190 MobiDBLite consensus disorder prediction 62 83 - -
Bda03g00332 190 SUPERFAMILY RING/U-box 89 155 - -
Bda03g00332 190 MobiDBLite consensus disorder prediction 64 79 - -
Bda03g00332 190 CDD RING-H2_EL5_like 107 150 - -
Bda03g00332 190 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Bda03g00332 190 MobiDBLite consensus disorder prediction 164 179 - -
Bda03g00332 190 MobiDBLite consensus disorder prediction 1 21 - -
Bda03g00332 190 PANTHER RING-H2 FINGER PROTEIN ATL8 1 184 - -
Bda03g00332 190 SMART ring_2 108 149 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00332 Bda-Chr3:2799378 Bda14g00192 Bda-Chr14:1369540 1.52E-30 dispersed
Bda11g00985 Bda-Chr11:9555561 Bda03g00332 Bda-Chr3:2799378 4.31E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00332 - - tcc:18591745 238.424