Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00340 ATGGAAGAAAAAGAAGAGGAAGACTCTACCTTAGTGTTTCGACAGTTGCAGGACTCTGTGAATGCCCATCCACATGATCCTTCTGTCCATTTTAATCTTGGGCTTTTCCTCTGGGAAAAAGGAACCGACAAGGAAAAATCGGCAGCGGCGGAGCATTTCCTAGAATCGGCCAAATTAAACCCTCAGAATGCCGCTGCTTTCAGATACCTGGGAGATTACTACGCCACTGCTATGTCAGATACCAATAGAGCCATTAAATGTTACCAAAGAGTTGTTTCCCTCAATCCTGACGACTCTCAGGCTGGGGAAGCTTTCTGTGATTTGTTGGACCGAGAGGGGAAAGTGAGTTTGGAAGGAGCAGTATGCAAAGAAGCTTCTGAAAAGTCACCTAGGGCTTTTTGGGCCTTCCGGAGATTGGGATACTTGCAGGTGCATCAAAATAAATGGCCTGAAGCTATTCAAAGTCTTCAACATGCTATTCGCGGCTATCTGAACTGTGCTGATCTGTGGGAAGCTTTGGGTCTTGCTTATCAACGACTCGGCAGGTTCACTGCAGCCATTAAGTCCTATGGGCGAGCCATCGAATTGGAAGATGACAAAGTATTTTCTTTGGTCGAAAGCGGAAACATTTTCTTGATGCTTTGCTCTTTTAAGAAAGGAGTCGAACATTTTCGAAAAGCTTTGGATATATCACCTCAAAATGTGTCTGCACTATTTGGGCTCTCTTCTGGGTTGCTTGGTATGGGAAAGGAATGTATTAAAGTGGGAGGATTCAGATGGGCTTCTTCAGTGTTAGAGGAAGCAAATGAAGTTGCCAAATTGGGAACTTGTTTAGCTGGAAATTCATCATGTATCTGGAAATTGTGCGGTGATATTCAGCTTATGTACGCAAAATATTTTCCGTGGCTAGGAGGCCAAAATAAAGAAATGGATATAGAAGCTTTTAAGACTTCTATCCTTTCATGGAAGCAAACCTGTTTTACGGCTGCAATTTCAGCCAAACGTTCCTATCAGAAGGCTTTGCACTTGGCTCCATGGCAAGCTAATGCATACATAGATGTTGCAATCACTTCTGATGTTATTTTCTCGTTGGATAAGAGCTGTGGACCTGACGTGAATTCTTGGTCGTTGCCAAAGAAGATGACTTTGGGTTCCTTGTTACTTGAAAGTGAGAATTGTGAGTTTTGGATTGTGTTGGGATGTCTATCTGATGATAACGCATTGAAGCAACATGCATTATTAAGGGGGCTTCAATTGGATGTCTCTTTAGCTGTAGCATGGGCGTATCTTGGGCAGCTTTACCGGAAACAAGGTAAAAAGCAATTGACAGTGCAAGCATTTGATAATGCCAGGAGTATTGATCCCTCTCTAGCAATACCGTGGGCAGGCATGTCAGCTGATTTCCATATTAGGGAGTTCACATCAGATGAGGCATTTGAGAGCTGTTTACGAGCTGTGCAGATATTGCCTGTTCCGGAATTCCAAATTGGTCTTGCTAAGCTTGCTCTTCAGTCTGGAAATCTTTCTTCTTCGCAGGTATATGGAGCCATCCAACAGGCCATACAATGCGCACCTTTCTATCCTGAATCTCATAATTTAAATGGACTAGTTTGTGAGGCACGAGCAGATTATCATTCTGCTACATTATCATACAGATTAGCGCGCTGGTCAATTATAAGTTCTTCTTACCATGATCTAAACTCTGATGTTAGAGATGTATCAATTAATATAGCCAGATCACTATCTAAGGCAGGTAATGCACTCGATGCTTTGAAGGAGTGTGAAGATTTGAAAAAGAAAGGAATGCTTGACGTTGAGGGATCACAAATATATGCTTTCTCTCTGTGGCAACTTGGTAAAAACAGCGAGGCCCTTGCTGTGGCAAGAAATATTGCTGCTAGTGTTTCTTCAATGGACAATTCTTCTCAGGCTACCGCTGTTAGTTTTATCTGTCGGTTGCTTTATTCAGCATCGGGATTGGATTCGACATTCAACAGCATTGAGAAAATGCCAAAGAAACTGTTTCAGAATTCAAAAGTTACTTTTATAGTGTCAGCTATTCATGTGTTTGACTGGAGTAATCGACTTGAATCCATTGTTTCAAGCAGCCGTTTTTCCCTTACTTCTCAAGAAGAAATTACCAGAATGCACTTTTTGATAGCACTTGGCAAACTGGTTAAACATGGATCAAAAGGCTGTCTGGGCTTTCAGAGTGGAGTGTCTCACCTCAGAAAATATCTGCATAGATACCCTAACAGTAGTTTACTTAGGAACCTACTTGGTTACCTTCTGCTGTCCAAAGAAGATGGGAGTGATAGTCACACTGCTACCAGATGCTGCAGTCTATATACCTCTGACCAACTGGCTAAAGAAGGGTTAAAATCTGTTTATGAAATTCACGGTGCTGGAGCATTTTCGTGCTATGCAATTGGCAACAGCAATCCCAAGTTTACTTACCCTACATGTACATGCAAGTGCCAGAATAAAACTGGAGCTACATATGAACTGCAAAAATGGTTGCGGCGAGAGCCATGGAATTACAATGCTCGATACCTGCTGATACTGAATTATTTACAAAAGGCGCGGGAAGAGAAATTTCCATATCATCTTTGTATTACACTTGAACGGCTTGTTACTGTGGCTCTTTCATACTATTCACACCCTGAGAAGGATAAGTCTTACCAATATCAAAAGTTTCAGATATTACTTTGTGCTTCAGAGATCAGTTTGCAAGATCGCAATCTAATTGATTCCATCAACTTAGCCAAAAGTGCATCAGCTATCTTGCTTCCTGCTAGTTATAGTTTCTTTGCACATTTGTCACTATGTAGAGCCTATGCTGCGGTGAATGATGCCATAAACCTTCAAATAGAATTCGCAAAATGTTTGGAGCTGAAGACAGATAACGACCTTGGTTGGATTTGTCTTAAATTCATTGAATCTCGATTCCTAAGTGATTCCAATCTCCTAGATATAATATTGAAAGACTACTTGAAAGAGATGAAGAATCCGCGTACCATTTCGACTGTCTTATTTAAATTGGTGGAAGGCTTGATAACTATGTGGAAGCTTGATTTCACTGCTGCTGAAAAGTTGCTTGCTGAGTCTTCGTCACTGGCTTCGGATGAGACCTGCCTCTTATTTTGCCATGGAACAGCATGCGTTAAACTTGCCAGAGAGTCCGGAAGCTCGCAATTTTTATCGGGTGCACTAAAGAGTCTTGCAAGAGCACAAGCAGCCTCTTTAATTCCCATACCTATCATCTCAGTCATGCTGGCGCAAGCAGAAGGAAGCCTCGGTTCAAAAGAAAAGTGGGAGAGAAACCTTCGATCTGAATGGTTCTCTTGGCCTCCAGAAAGGAGACCGGCGGAGCTCTTTCTTCAGATGCATTTACTGGCAAAACAGTCAAAAGCAGAACCAGACCATTTCACCATAGAGTTCTGTCAAAGTCCTGAGAAGTGGGTACTGCGGGCTATCCATGCGAATCCTTCTTGTCCGAGATACTGGAAGGTTTTGCAAAAGCTTCTGGAATGA 3534 42.19 MEEKEEEDSTLVFRQLQDSVNAHPHDPSVHFNLGLFLWEKGTDKEKSAAAEHFLESAKLNPQNAAAFRYLGDYYATAMSDTNRAIKCYQRVVSLNPDDSQAGEAFCDLLDREGKVSLEGAVCKEASEKSPRAFWAFRRLGYLQVHQNKWPEAIQSLQHAIRGYLNCADLWEALGLAYQRLGRFTAAIKSYGRAIELEDDKVFSLVESGNIFLMLCSFKKGVEHFRKALDISPQNVSALFGLSSGLLGMGKECIKVGGFRWASSVLEEANEVAKLGTCLAGNSSCIWKLCGDIQLMYAKYFPWLGGQNKEMDIEAFKTSILSWKQTCFTAAISAKRSYQKALHLAPWQANAYIDVAITSDVIFSLDKSCGPDVNSWSLPKKMTLGSLLLESENCEFWIVLGCLSDDNALKQHALLRGLQLDVSLAVAWAYLGQLYRKQGKKQLTVQAFDNARSIDPSLAIPWAGMSADFHIREFTSDEAFESCLRAVQILPVPEFQIGLAKLALQSGNLSSSQVYGAIQQAIQCAPFYPESHNLNGLVCEARADYHSATLSYRLARWSIISSSYHDLNSDVRDVSINIARSLSKAGNALDALKECEDLKKKGMLDVEGSQIYAFSLWQLGKNSEALAVARNIAASVSSMDNSSQATAVSFICRLLYSASGLDSTFNSIEKMPKKLFQNSKVTFIVSAIHVFDWSNRLESIVSSSRFSLTSQEEITRMHFLIALGKLVKHGSKGCLGFQSGVSHLRKYLHRYPNSSLLRNLLGYLLLSKEDGSDSHTATRCCSLYTSDQLAKEGLKSVYEIHGAGAFSCYAIGNSNPKFTYPTCTCKCQNKTGATYELQKWLRREPWNYNARYLLILNYLQKAREEKFPYHLCITLERLVTVALSYYSHPEKDKSYQYQKFQILLCASEISLQDRNLIDSINLAKSASAILLPASYSFFAHLSLCRAYAAVNDAINLQIEFAKCLELKTDNDLGWICLKFIESRFLSDSNLLDIILKDYLKEMKNPRTISTVLFKLVEGLITMWKLDFTAAEKLLAESSSLASDETCLLFCHGTACVKLARESGSSQFLSGALKSLARAQAASLIPIPIISVMLAQAEGSLGSKEKWERNLRSEWFSWPPERRPAELFLQMHLLAKQSKAEPDHFTIEFCQSPEKWVLRAIHANPSCPRYWKVLQKLLE 1177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2874279 2886437 + Bda016301.1 Bda03g00340 3599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00340 1177 SUPERFAMILY TPR-like 16 237 IPR011990 GO:0005515
Bda03g00340 1177 Pfam Tetratricopeptide repeat 167 198 IPR013105 -
Bda03g00340 1177 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Bda03g00340 1177 ProSiteProfiles TPR repeat profile. 424 457 IPR019734 GO:0005515
Bda03g00340 1177 SUPERFAMILY TPR-like 515 864 IPR011990 GO:0005515
Bda03g00340 1177 SMART tpr_5 133 166 IPR019734 GO:0005515
Bda03g00340 1177 SMART tpr_5 201 234 IPR019734 GO:0005515
Bda03g00340 1177 SMART tpr_5 64 98 IPR019734 GO:0005515
Bda03g00340 1177 SMART tpr_5 167 200 IPR019734 GO:0005515
Bda03g00340 1177 SMART tpr_5 424 457 IPR019734 GO:0005515
Bda03g00340 1177 SMART tpr_5 27 63 IPR019734 GO:0005515
Bda03g00340 1177 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 37 13 866 - -
Bda03g00340 1177 SUPERFAMILY TPR-like 391 554 IPR011990 GO:0005515
Bda03g00340 1177 ProSiteProfiles TPR repeat profile. 167 200 IPR019734 GO:0005515
Bda03g00340 1177 Gene3D Tetratricopeptide repeat domain 327 657 IPR011990 GO:0005515
Bda03g00340 1177 Gene3D Tetratricopeptide repeat domain 4 274 IPR011990 GO:0005515
Bda03g00340 1177 ProSiteProfiles TPR repeat region circular profile. 167 199 - -
Bda03g00340 1177 PANTHER SUPERKILLER 3 PROTEIN-RELATED 13 866 IPR039226 GO:0006401|GO:0055087
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00340 K12600 SKI3, TTC37; superkiller protein 3 - qsu:112024589 1551.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00340 Bda-Chr3:2874279 Bda01g01074 Bda-Chr1:45301723 4.22E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g17 . Blo12g00835 . Bda03g00340 . Bpe04g00300 Bma04g00309 . . . . Cma09g00007 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0003 . Csa04g02754 . . . . . . . . . . . . Cmo09g00008 . . . Car09g00007 . . . . . . . . . . . . . . . . . . . Cme07g00008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007064 1 4 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 2 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00340 Bda_Chr03 FPKM 2.954762 3.233269 2.675047 2.88144 2.437397 2.089652 2.406112 1.917268 2.062788