Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00342 ATGGTGAAGGACACCGAATACTACGACGTGCTTGGAGTCAGCCCCACCGCCTCCGAGGCCGAGATCAAGAAAGCATACTATTTGAAGGCGAGACAAGTCCATCCAGATAAAAATCCAAACGACCCACTTGCAGCACAAAATTTTCAGGTGTTGGGAGAGGCTTACCAGGTATTAAGTGATCCAGGACAACGACAAGCATATGATTCTTACGGAAAATCTGGAGTTTCAACCGACGCAATTATTGATCCAGCAGCCATCTTTGCCATGCTTTTTGGGAGTGAGCTTTTTGAAGAATATATTGGCCAGCTGGCAATGGCATCAATGGCTTCACTAGATATTTTTACGGAAGGGGAGCAGTTTGATGCCAAAAAGTTGCAGGAGAAAATGAGGATAGTTCAAAAGGAAAGAGAGGAAAAGCTTGCACAAATACTGAAAGATCGATTAAACCAGTATGTGCAAGGTAGTAAAGAAGAATTTATTAACCACGCGGAAGCTGAAGTAGCAAGACTTTCCAATGCAGCCTACGGCGTTGACATGTTAAATACAATAGGCTACATATATGCCAGACAGGCAGCGAAAGAACTGGGGAAGAAAGCAATATATTTGGGTGTGCCCTTTGTTGCTGAGTGGTTTAGGAACAAAGGTCACTTTATAAAATCCCAAGTTACAGCTGCAACAGGTGCGATTGCTCTGATTCAGCTCCAGGAGGATATGAAAAAGCAACTTAGTGGAGAAGGAAACTACACCGAGGAAGAGCTTGAGTTATATGTTCAATCTCACAAGAAATTGATGATTGATTCCCTTTGGAAGCTTAATGTTGCCGATATTGAGGCTACACTTTCCCGTGTTTGTCAAATGGTACTCCAAGATAATAATGTCAAGAAGGAAGAACTCCGAGCACGAGCAAAAGGGTTAAAGAATCTTGGTAAAATCTTTCAGGTACTGCCTTTTATACATTCTTTTCATGTATTTTAA 975 41.95 MVKDTEYYDVLGVSPTASEAEIKKAYYLKARQVHPDKNPNDPLAAQNFQVLGEAYQVLSDPGQRQAYDSYGKSGVSTDAIIDPAAIFAMLFGSELFEEYIGQLAMASMASLDIFTEGEQFDAKKLQEKMRIVQKEREEKLAQILKDRLNQYVQGSKEEFINHAEAEVARLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFVAEWFRNKGHFIKSQVTAATGAIALIQLQEDMKKQLSGEGNYTEEELELYVQSHKKLMIDSLWKLNVADIEATLSRVCQMVLQDNNVKKEELRARAKGLKNLGKIFQVLPFIHSFHVF 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2893279 2898192 - Bda016303.1 Bda03g00342 3601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00342 324 Pfam DnaJ domain 6 68 IPR001623 -
Bda03g00342 324 PRINTS DnaJ domain signature 43 63 IPR001623 -
Bda03g00342 324 PRINTS DnaJ domain signature 63 82 IPR001623 -
Bda03g00342 324 PRINTS DnaJ domain signature 8 26 IPR001623 -
Bda03g00342 324 PRINTS DnaJ domain signature 26 41 IPR001623 -
Bda03g00342 324 CDD DnaJ 6 60 IPR001623 -
Bda03g00342 324 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Bda03g00342 324 PANTHER CHAPERONE PROTEIN DNAJ 10-LIKE ISOFORM X1 1 313 - -
Bda03g00342 324 Coils Coil 122 142 - -
Bda03g00342 324 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 313 - -
Bda03g00342 324 SMART dnaj_3 5 63 IPR001623 -
Bda03g00342 324 Pfam X-domain of DnaJ-containing 133 313 IPR026894 -
Bda03g00342 324 Gene3D DnaJ domain 1 83 IPR036869 -
Bda03g00342 324 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Bda03g00342 324 Coils Coil 288 308 - -
Bda03g00342 324 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00342 - - - vvi:100259812 580.482
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01580 Bda03g00342 CCT
Bda01g01383 Bda03g00342 CCT
Bda01g01580 Bda03g00342 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00342 Bda-Chr3:2893279 Bda08g00944 Bda-Chr8:17708643 2.31E-128 dispersed
Bda15g00888 Bda-Chr15:14584724 Bda03g00342 Bda-Chr3:2893279 3.24E-12 dispersed
Bda15g00892 Bda-Chr15:14627558 Bda03g00342 Bda-Chr3:2893279 2.92E-06 dispersed
Bda03g00342 Bda-Chr3:2893279 Bda01g01383 Bda-Chr1:49717568 1.10E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g3 Blo01g01664 . . Bda03g00342 Bpe02g00277 Bpe04g00302 Bma04g00311 Bma01g02435 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1483 . Lsi04g02441 Csa04g02758 . . . . . Bda01g01580 Bpe02g01770 . . . . . . . . . . . . . . . . . . . Cla11g01868 Cam11g1938 Cec11g1964 . Clacu11g2104 Cmu11g1905 Cre11g2313 . . Chy07g00444 .
Vvi18g1178 . Blo12g00834 . Bda03g00342 . Bpe04g00302 . . Cmo04g02530 Cmo15g00644 . . . . . . Cpe13g00655 Bhi04g01834 . . . . . . . . . . . . . . . Cone17ag0805 Cone20ag0410 . . . Cme03g00430 . Blo18g00226 . Bda01g01383 Bpe02g01596 . Bma01g00878 . . . . . . Car04g02328 Car15g00585 Cpe01g02091 . . . . . . . . . . . . . . . . . Chy03g00571 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00342 Bda_Chr03 FPKM 0.099098 0.0 0.0 0.0 0.0 0.0 0.0 1.738052 2.11185