Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00345 ATGACGAACAAGAAGCAGTTAATGTCTTCAGCACCTTGGAGGGGGGAGAAAGAGGAGGAATTTTCCGACGCAAAGCTCAAGGTCACCAAGCAGCCAGGAGGTACTTCTACCATGCACGTTCCTCGCAAGAAGAGCGTCAAATCGAAAAGCTCTAATGATAAAGACGACGATTCCTTTACCGAGATTGACCCTGAGCTCCGCTATAGCTTCCAGCGGAACTACCAGTTTCTTCAACGAGTATTCAGCATTGACACTCTTGTCAAGCCTCTTCCACCTGCCATGGCTTATAATGTCTCCCGCAACTTGAGCTTCTTCACAAGAATTTTCACACAGTTCTTTGATCCGAAAGGTATTGCAAATGCGCAGAAATCACTTGGACTTGGACAGGAAGAGAAAGCTCATGGAGACCCATTGCCGCAAGGTGGAGGGAGGAGCGAGATGGTTCCTGCTATGTTCATATTCGGAGATTCACTCATAGACAATGGAAACAACAACAACCTCCCCTCCTTAGCAAAAGCTAACTATTTTCCATATGGCATCGACTTCAATGGCGGACCCACAGGTCGTTTTTCCAATGGCTACACCATGGTTGATGAAATAGCTCAGCTGTTGGGGCTTCCATTAATTCCGTCATTCTCTGAAGCTTCCGGTGATCAAGTTCTTCACGGCGTAAACTATGCTTCTGCCGCTGCTGGGATTCTAGATGACACTGGCAGAAACTTCGTGAGTCGATTTCCTTTTAATCAGCAAATAACTAACTTTCAGAGCACCCTCGACCAAATCACCAACAATTTCGGCGGTCAAGATACAGTGGCAAGAGCAATCGGCCGGAGCATATTCTTCATCGGAATGGGCAGCAATGACTACCTAAACAACTACCTGATGCCCAATTACAACACCAAGAACCAGTACGACGGCCCCCAGTTCGCCAATCTGCTGGTGCAGCAATACTCTCAGCAGCTCACTAGACTTTATAGTCTTGGAGCGAGGAAATTTGTAGTAGCTGGTGTGGGACAAATGGGTTGCATTCCAAGCATATTAGCTCAGAGCCCAGTGGGAAGCTGCTCAGAAGAAGTAAACCAGCTTGTTCTACCTTTTAATGCCAATGTCAAGGCAATGGTCAATAATCTCAACGCCAATCTACCCGGCTCTCGATTTACTTACATCGACATTGCTCGGATGTTCCAAGACATCCTCGTCAACGCACAATCATACGGGCTGAGCGTGGTCAATAGAGGGTGTTGTGGAATAGGTAGAAACAGTGGGCAAATAACGTGTCTTCCATTTCAAACGCCTTGTCCAAACAGAGAACAGTATGTTTTCTGGGATGCGTTCCATCCCACAGAAGCTGTCAACATTATATTGGGAAGGAAGGCCTTCAATGGAGACACCACCGTCGTATATCCGATCAACATACAGCAGCTTGCCAGCCTTTAA 1437 46.9 MTNKKQLMSSAPWRGEKEEEFSDAKLKVTKQPGGTSTMHVPRKKSVKSKSSNDKDDDSFTEIDPELRYSFQRNYQFLQRVFSIDTLVKPLPPAMAYNVSRNLSFFTRIFTQFFDPKGIANAQKSLGLGQEEKAHGDPLPQGGGRSEMVPAMFIFGDSLIDNGNNNNLPSLAKANYFPYGIDFNGGPTGRFSNGYTMVDEIAQLLGLPLIPSFSEASGDQVLHGVNYASAAAGILDDTGRNFVSRFPFNQQITNFQSTLDQITNNFGGQDTVARAIGRSIFFIGMGSNDYLNNYLMPNYNTKNQYDGPQFANLLVQQYSQQLTRLYSLGARKFVVAGVGQMGCIPSILAQSPVGSCSEEVNQLVLPFNANVKAMVNNLNANLPGSRFTYIDIARMFQDILVNAQSYGLSVVNRGCCGIGRNSGQITCLPFQTPCPNREQYVFWDAFHPTEAVNIILGRKAFNGDTTVVYPINIQQLASL 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2912657 2919290 - Bda016306.1 Bda03g00345 3604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00345 478 PANTHER OS05G0419800 PROTEIN 130 478 - -
Bda03g00345 478 Gene3D SGNH hydrolase 144 463 IPR036514 -
Bda03g00345 478 MobiDBLite consensus disorder prediction 11 26 - -
Bda03g00345 478 Pfam GDSL-like Lipase/Acylhydrolase 152 457 IPR001087 GO:0016788
Bda03g00345 478 MobiDBLite consensus disorder prediction 1 60 - -
Bda03g00345 478 CDD SGNH_plant_lipase_like 149 463 IPR035669 -
Bda03g00345 478 SUPERFAMILY SGNH hydrolase 271 458 - -
Bda03g00345 478 MobiDBLite consensus disorder prediction 46 60 - -
Bda03g00345 478 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 130 478 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00345 - - - rcu:8263240 587.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00051 Bda-Chr2:2216766 Bda03g00345 Bda-Chr3:2912657 1.50E-130 dispersed
Bda03g00345 Bda-Chr3:2912657 Bda07g00955 Bda-Chr7:11069069 8.52E-128 dispersed
Bda06g00632 Bda-Chr6:8702738 Bda03g00345 Bda-Chr3:2912657 5.98E-25 dispersed
Bda11g00097 Bda-Chr11:1160191 Bda03g00345 Bda-Chr3:2912657 2.31E-78 dispersed
Bda14g01224 Bda-Chr14:12345572 Bda03g00345 Bda-Chr3:2912657 9.80E-84 dispersed
Bda15g00526 Bda-Chr15:8308103 Bda03g00345 Bda-Chr3:2912657 9.78E-48 dispersed
Bda11g00935 Bda-Chr11:9129505 Bda03g00345 Bda-Chr3:2912657 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1667 . Blo12g00830 . Bda03g00345 . Bpe04g00305 Bma04g00316 . . . . . . . . Cpe06g01005 . . . . . . . . Cla08g00065 Cam08g0062 Cec08g0189 Cco08g0120 Clacu08g0077 Cmu08g0075 Cre08g0067 . . . . . . . Cme09g00042 . . . . . . . . . . Cmo09g01299 . . . Car09g01142 . . . . . . . . . . . . . . . . Lsi08g00051 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002428 2 2 3 2 3 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 3 2 3 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00345 Bda_Chr03 FPKM 1.87327 1.636987 1.217293 0.885125 0.0 0.0 0.0 0.0 0.0