Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00348 ATGGGCTGTATTTGCTCGAAAGAATCCCCAGAACCAAAGGAAGTCGATGACAACGAGGAAGCGGGAGAGTTTAACAAGACTTCAGACCAATCGGGCACTCCTACTCCTTCAAAGAGGGAAGATTTTGTTCTAAAAATAAGAGGCAGTGTTCAAAATGTTGGTTTAGTTAGCTTTTTATCGAGGCAGGCGTCACAAACAAATGGGGGTCCAGTTCAAGTGCGAAAAGGGAAAAATGGAAGTTCCAATGATGAAGAAAACAAAGCGAGAAATAACGAAAGAAGAAGAAAGGATCATAATCAGAAATTGGCGAAGAAGGATGTGAGAGTGAATGGAAAACTACCGCAGATGTCAAGAATAGTCAGCCTCCCAAATGGAGCAGAAGGTGGACAAGTTTTTGCTGGATGGCCATCTTGGTTAACTTCAGTAGCCGGAGATGCCATCAAAGGATGGATTCCTCGACGAGCAGACTCCTTTGAGAAGCTAGACAAAATTGGTCAGGGAACTTACAGCAGTGTATATAGGGCCCGTGACTTGGAAACTGGTAAAATTGTTGCATTGAAGAAAGTAAGATTTGTAAATATGGATCCAGAAAGTGTACGTTTTATGGCTAGAGAAATATGTATTATGCGTGAACTTGATCATCCAAATGTTATGAAGCTTGAGGGTTTAGTTACATCCAGATTGTCATGCAGCTTGTACCTTGTCTTTGAGTACATGGAACATGACCTAGCTGGGCTCGTAGCAACTCCTGGCATCAAGTTTACAGAGCCGCAGATTAAATGCTTTATGCAACAACTATTACATGGGCTTGAACACTGCCACAGTCGTGGTGTTCTGCACCGAGACATCAAGGGCTCAAATCTTCTCATTGACAACAATGGAGTTCTCAAGATTGGAGACTTTGGTCTGGCAACTTTTTTTGAGCCTGATCAAAAGCAGCCTTTAACTAGTCATGTGGTGACGTTGTGGTATAGGCCACCTGAGCTTTTGCTTGGTTCTACCAAGTATGGAGTAGCCATAGATCTTTGGAGCACTGGATGTATACTTGCAGAATTGTTCGCTGGTAAACCGATCATGCCCGGGAGAACAGAGGTTGAACAAATGCATAAAATCTTTAAACTATGTGGTTCGCCATCTGAGGATTATTGGCAAAGAACTAAATTTCCGCATGCAACAAGTTTCAAGCCTCACCGCCCTTATAAGCGACATCTTACTGAGACATTCAGGAATTTCCCTTCTTCAGCTTTAGCTCTTGTTGATAAGCTTCTATCGATTAAGCCAGAGGAACGAGGATCTGCTAATTCGGCTCTTAGGAGCGAGTTTTTCCGAACAGATCCCCTCCCTTGTGACCCTTCAACTTTACCAAAATATCCTCCAAGTAAGGAGTTTGATGCCAAGTGCCGAAATGAAGAAGCAAGAAGGTATTCTCTCTTCGCACACTCGTATATCTTTGAACCAATGTCAACGATAATGAGGCCGAATAATAAGTCCTTATGA 1497 42.75 MGCICSKESPEPKEVDDNEEAGEFNKTSDQSGTPTPSKREDFVLKIRGSVQNVGLVSFLSRQASQTNGGPVQVRKGKNGSSNDEENKARNNERRRKDHNQKLAKKDVRVNGKLPQMSRIVSLPNGAEGGQVFAGWPSWLTSVAGDAIKGWIPRRADSFEKLDKIGQGTYSSVYRARDLETGKIVALKKVRFVNMDPESVRFMAREICIMRELDHPNVMKLEGLVTSRLSCSLYLVFEYMEHDLAGLVATPGIKFTEPQIKCFMQQLLHGLEHCHSRGVLHRDIKGSNLLIDNNGVLKIGDFGLATFFEPDQKQPLTSHVVTLWYRPPELLLGSTKYGVAIDLWSTGCILAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQRTKFPHATSFKPHRPYKRHLTETFRNFPSSALALVDKLLSIKPEERGSANSALRSEFFRTDPLPCDPSTLPKYPPSKEFDAKCRNEEARRYSLFAHSYIFEPMSTIMRPNNKSL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2930185 2932624 - Bda016309.1 Bda03g00348 3607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00348 498 ProSitePatterns Protein kinases ATP-binding region signature. 164 187 IPR017441 GO:0005524
Bda03g00348 498 MobiDBLite consensus disorder prediction 61 105 - -
Bda03g00348 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Bda03g00348 498 Coils Coil 81 101 - -
Bda03g00348 498 MobiDBLite consensus disorder prediction 9 24 - -
Bda03g00348 498 MobiDBLite consensus disorder prediction 78 105 - -
Bda03g00348 498 Pfam Protein kinase domain 158 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g00348 498 SMART serkin_6 158 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g00348 498 MobiDBLite consensus disorder prediction 1 41 - -
Bda03g00348 498 PANTHER OS02G0559300 PROTEIN 68 479 - -
Bda03g00348 498 Gene3D Phosphorylase Kinase; domain 1 145 240 - -
Bda03g00348 498 Gene3D Transferase(Phosphotransferase) domain 1 241 480 - -
Bda03g00348 498 SUPERFAMILY Protein kinase-like (PK-like) 152 450 IPR011009 -
Bda03g00348 498 ProSiteProfiles Protein kinase domain profile. 158 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g00348 498 PANTHER CELL DIVISION PROTEIN KINASE 68 479 - -
Bda03g00348 498 CDD STKc_CDK9_like 158 442 - -
Bda03g00348 498 MobiDBLite consensus disorder prediction 61 77 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00600 Bda-Chr2:46856943 Bda03g00348 Bda-Chr3:2930185 9.34E-122 dispersed
Bda03g00348 Bda-Chr3:2930185 Bda10g01151 Bda-Chr10:45572664 0 dispersed
Bda14g01181 Bda-Chr14:11570470 Bda03g00348 Bda-Chr3:2930185 6.18E-136 dispersed
Bda14g01184 Bda-Chr14:11707314 Bda03g00348 Bda-Chr3:2930185 3.14E-131 dispersed
Bda11g00934 Bda-Chr11:9121454 Bda03g00348 Bda-Chr3:2930185 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69529 PF00069 Pkinase 1.60E-69 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00348 K08819 - csv:101208709 681.019