Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00351 TTATCTATGGAGGAATATGGCTGCGGCCGTGGACGTGCTCCTCCCACTTACAGAGGAGTGAGAAAGAGAAAATGGGGCAAATGGGTGTCGGAAATTCGAGAGCCGGGGAAGAAAACCAGAATATGGCTTGGGAGCTATGAGGCTCCGGAAATGGCAGCAGCCGCCTACGATGTGGCAGCGTTGCACCTTAAAGGACCTGGTACCCACCTCAACTTTCCTGAGTTGGTGGGGAGTCTACCTCGACCGGCGACTTCTAGGCCGGAGGATATTCAACTGGCAGCACAAGAGGCGGCGTTGAGATTCAGAAAGCCGGCGAGTGTTTTGCCAGCGTCATCAGTGGGTGTGTCCGGGGGAGAGAGAACCGTTCCGGCAGTGAGGGTGGGACTTTCGCCGAGCCAAATTGAGGCCATAAACGAGTGGCCGTTGAATTCTCCGACAATGTGGATGCAAATGTGTGAATACGAGGAGTATAACGATAGTACAGAGTGGGAAGAAGAGATGAGGCTGTATGATCAGTCTCCCTCCATATGGGATTATTAG 540 53.15 LSMEEYGCGRGRAPPTYRGVRKRKWGKWVSEIREPGKKTRIWLGSYEAPEMAAAAYDVAALHLKGPGTHLNFPELVGSLPRPATSRPEDIQLAAQEAALRFRKPASVLPASSVGVSGGERTVPAVRVGLSPSQIEAINEWPLNSPTMWMQMCEYEEYNDSTEWEEEMRLYDQSPSIWDY 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2967247 2967786 + Bda016313.1 Bda03g00351 3610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00351 179 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Bda03g00351 179 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Bda03g00351 179 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Bda03g00351 179 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Bda03g00351 179 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Bda03g00351 179 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Bda03g00351 179 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Bda03g00351 179 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Bda03g00351 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 178 - -
Bda03g00351 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 16 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00351 Bda-Chr3:2967247 Bda02g00418 Bda-Chr2:44826486 6.83E-35 dispersed
Bda11g00932 Bda-Chr11:9113856 Bda03g00351 Bda-Chr3:2967247 1.10E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15640 PF00847 AP2 6.20E-13 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00351 - - zju:107421431 200.675