Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00363 ATGAATTGCCATCAGTTGAGTGCTTTTATTACAAAAGTTTGCAAAGAAGCAGCGTCATCAAAAGAACAGTGGGAAGAACAATGCAAGCTTTGGCCAACATCCTATCATCCACCAACCTACAAGATTGATGGTGTTGCAGGATTCAGTGAAGAGGACCGACAATCAGTTATCAGCTTTATGAAGTTTGCTGTTGAGTTGGCAGAATATGGTGATGATTTGGTAGTCAATGCTGCACTAATAGTGGATCCTTCAGTTAAGCAGATCATAGCAAGTGCATGTGATGAAACTTATACTCGAAATACACCTGGAAGGAAACCGTGCTTCAATAATTGCTCCTCCCGTTTTGATAACTCTGAGTTGCCATCGAATGGTTGTCTCGAAGAACTGAATCAGAATCATAGTGGTGTATCTTGTCTGTATCCTTGGCAGTGGGATAAACAACCATCACATTTGGACAATTTTTATTATTGGCATCCCTTGAGACACGCTGCAATGGTTGCTATTGAATCGTCTGCTGCTCGGGACAGAAAACTATTCCCTGGTTATGGAGAAACAGTTGAATTAAGCCAGACGGAGGCCTCATCTGCCAGTTCTTCCTCAAAACGACAAAAGATCGATCTGAAAAACGCTGAGAATGATGAGAATATTACTTCTCTTGATGAAAGTGCTTCTTCCCTTCTGTCGAGGCCTTACCTGTGCACTGGCTATGACATGTACTTGGTATGGGAGCCATGTGTTATGTGTGCAATGGCACTTGTCCACCAGAGAATGAGAAGAATATTTTATGCGTATCCGAACCCAAATGCGGGTGCATTGAGCAGCGTTTACAGACTGCAGGGAGAAAAGAGCTTGAATCATCATTATGCCGTTTTCAGGGTGCTACTGCCTGGACCATAA 897 42.92 MNCHQLSAFITKVCKEAASSKEQWEEQCKLWPTSYHPPTYKIDGVAGFSEEDRQSVISFMKFAVELAEYGDDLVVNAALIVDPSVKQIIASACDETYTRNTPGRKPCFNNCSSRFDNSELPSNGCLEELNQNHSGVSCLYPWQWDKQPSHLDNFYYWHPLRHAAMVAIESSAARDRKLFPGYGETVELSQTEASSASSSSKRQKIDLKNAENDENITSLDESASSLLSRPYLCTGYDMYLVWEPCVMCAMALVHQRMRRIFYAYPNPNAGALSSVYRLQGEKSLNHHYAVFRVLLPGP 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3049964 3053830 - Bda016326.2 Bda03g00363 3622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00363 298 PANTHER INACTIVE TRNA-SPECIFIC ADENOSINE DEAMINASE-LIKE PROTEIN 3-RELATED 8 294 - -
Bda03g00363 298 MobiDBLite consensus disorder prediction 190 209 - -
Bda03g00363 298 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 155 275 IPR002125 -
Bda03g00363 298 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 8 294 - -
Bda03g00363 298 SUPERFAMILY Cytidine deaminase-like 29 294 IPR016193 GO:0003824
Bda03g00363 298 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 58 263 IPR002125 -
Bda03g00363 298 Gene3D Cytidine Deaminase, domain 2 46 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00363 K15442 TAD3, ADAT3; tRNA-specific adenosine deaminase 3 - qsu:112016311 380.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00363 Bda-Chr3:3049964 Bda13g00949 Bda-Chr13:11199023 2.86E-07 dispersed
Bda03g00363 Bda-Chr3:3049964 Bda03g00364 Bda-Chr3:3055279 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1754 . . . Bda03g00363 . Bpe04g00325 Bma04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007713 2 3 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 2 0 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00363 Bda_Chr03 FPKM 46.896641 52.036015 91.903305 91.971725 44.039452 46.081524 46.205505 129.009903 132.783035