Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00364 ATGACTCCATCTAATTTGGCAGGGCAGTTTGGTGATACGACTTACACCAAGGTTTTTGTTGGAGGGTTGGCTTGGGAAACCCAGAAAGAGACGATGAAGAAGTATTTTGAACAGTTTGGTGATATCTTGGAGGCTGTTGTCATTACTGATAAAGCAACTGGAAGATCCAAGGGCTATGGATTTGTGACTTTTCGAGAACCCGAAGCCGCCATGAGAGCTTGTGTGGATGCTGCTCCTGTTATAGATGGAAGGAGGGCCAACTGCAATCTGGCTTCTTTGGGTGTTCAGAGATCCAAGCCTTCAACACCAAAACATGGTGGAGGCAGAAACTTTAGGGTAATGGGGTCTTTCCAGACAGGGTTTGGAGGGAGTGCTGGAGCAGCTTTTCCAGCAACCTTCCCTCATTATGCCTTTCAACAAGGGATGCCTTACAATGTTTATGGGTATTCTTCGTACTCGCCAGATTACACATACCCTACGTCGGGAAATCAGGTTGTGGATCGACGTGGTGCAATGATTTTGCGGTTCTTACCTGCTATTGGTGAACGCAAGTATGACTGGGAGAAGAGGCAGGTGTTTGCGTTGTCGCCGACAGAAATTGGTACTTTATTGAACTTGGGTCCCAAAGATTCATGTGAATTCTTTCACGACCCTTCAATATTATCAAGTAAGGCTGGTCAAGTGAAGAAAAGCTTATCAATTAAGTCAATTGGAGATGGTACTGGGTATTTCGTTTCTTTGATGAATGTTTTTGCCGCTGTTGTTGAGCCCAAGCTAGTGAATGTTCTTGTAAGGCACCTAAATCAGATAGCACCTTTGGAAAGTCTACGCCATGTGAAGAGAGTTCAGAAGAAATATATTGATGGAACAACTCAGTTAGCTGTGATCTTATGTCAAGCTAATGAAAATGATTCTTACCCAGATAGCATACCTCACAATGTACGAGAGCTTATGAATTGCCATCAGTTGAGTGCTTTTATTACAAAAGTTTGCAAAGAAGCAGCGTCATCAAAAGAACAGTGGGAAGAACAATGCAAGCTTTGGCCAACATCCTATCATCCACCAACCTACAAGATTGATGGTGTTGCAGGATTCAGTGAAGAGGACCGACAATCAGTTATCAGCTTTATGAAGTTTGCTGTTGAGTTGGCAGAATATGGTGATGATTTGGTAGTCAATGCTGCACTAATAGTGGATCCTTCAGTTAAGCAGATCATAGCAAGTGCATGTGATGAAACTTATACTCGAAATACACCTGGAAGGAAACCGTGCTTCAATAATTGCTCCTCCCGTTTTGATAACTCTGAGTTGCCATCGAATGGTTGTCTCGAAGAACTGAATCAGAATCATAGTGGTGTATCTTGTCTGTATCCTTGGCAGTGGGATAAACAACCATCACATTTGGACAATTTTTATTATTGGCATCCCTTGAGACACGCTGCAATGGTTGCTATTGAATCGTCTGCTGCTCGGGACAGAAAACTATTCCCTGGTTATGGAGAAACAGTTGAATTAAGCCAGACGGAGGCCTCATCTGCCAGTTCTTCCTCAAAACGACAAAAGATCGATCTGAAAAACGCTGAGAATGATGAGAATATTACTTCTCTTGATGAAAGTGCTTCTTCCCTTCTGTCGAGGCCTTACCTGTGCACTGGCTATGACATGTACTTGGTATGGGAGCCATGTGTTATGTGTGCAATGGCACTTGTCCACCAGAGAATGAGAAGAATATTTTATGCATATCCGAACCCAAATGCGGGTGCATTGAGCAGCGTTTACAGACTGCAGGGAGAAAAGAGCTTGAATCATCATTATGCCGTTTTCAGGGTGCTACTGCCTGGACCATAA 1848 43.4 MTPSNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGRNFRVMGSFQTGFGGSAGAAFPATFPHYAFQQGMPYNVYGYSSYSPDYTYPTSGNQVVDRRGAMILRFLPAIGERKYDWEKRQVFALSPTEIGTLLNLGPKDSCEFFHDPSILSSKAGQVKKSLSIKSIGDGTGYFVSLMNVFAAVVEPKLVNVLVRHLNQIAPLESLRHVKRVQKKYIDGTTQLAVILCQANENDSYPDSIPHNVRELMNCHQLSAFITKVCKEAASSKEQWEEQCKLWPTSYHPPTYKIDGVAGFSEEDRQSVISFMKFAVELAEYGDDLVVNAALIVDPSVKQIIASACDETYTRNTPGRKPCFNNCSSRFDNSELPSNGCLEELNQNHSGVSCLYPWQWDKQPSHLDNFYYWHPLRHAAMVAIESSAARDRKLFPGYGETVELSQTEASSASSSSKRQKIDLKNAENDENITSLDESASSLLSRPYLCTGYDMYLVWEPCVMCAMALVHQRMRRIFYAYPNPNAGALSSVYRLQGEKSLNHHYAVFRVLLPGP 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3055279 3072893 - Bda016327.1 Bda03g00364 3623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00364 615 MobiDBLite consensus disorder prediction 507 526 - -
Bda03g00364 615 SUPERFAMILY Cytidine deaminase-like 346 611 IPR016193 GO:0003824
Bda03g00364 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Bda03g00364 615 CDD RRM_RBM24_RBM38_like 16 91 - -
Bda03g00364 615 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 472 592 IPR002125 -
Bda03g00364 615 PANTHER OS01G0876800 PROTEIN 1 161 - -
Bda03g00364 615 SMART rrm1_1 17 89 IPR000504 GO:0003723
Bda03g00364 615 Pfam Whirly transcription factor 152 252 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bda03g00364 615 Gene3D Cytidine Deaminase, domain 2 362 613 - -
Bda03g00364 615 PANTHER BOULE-RELATED 1 161 IPR037366 GO:0003729
Bda03g00364 615 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 375 580 IPR002125 -
Bda03g00364 615 Gene3D - 3 111 IPR012677 -
Bda03g00364 615 Gene3D Transcriptional Coactivator Pc4; Chain A 133 268 IPR009044 GO:0003677|GO:0006355
Bda03g00364 615 SUPERFAMILY ssDNA-binding transcriptional regulator domain 152 247 IPR009044 GO:0003677|GO:0006355
Bda03g00364 615 SUPERFAMILY RNA-binding domain, RBD 12 122 IPR035979 GO:0003676
Bda03g00364 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00364 K15442 TAD3, ADAT3; tRNA-specific adenosine deaminase 3 - qsu:112016311 469.929
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00364 Bda-Chr3:3055279 Bda08g00084 Bda-Chr8:767339 3.23E-49 dispersed
Bda03g00363 Bda-Chr3:3049964 Bda03g00364 Bda-Chr3:3055279 0 tandem
Bda11g01231 Bda-Chr11:12838065 Bda03g00364 Bda-Chr3:3055279 2.06E-26 transposed
Bda13g00949 Bda-Chr13:11199023 Bda03g00364 Bda-Chr3:3055279 1.82E-06 transposed
Bda11g00916 Bda-Chr11:8965331 Bda03g00364 Bda-Chr3:3055279 1.60E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1756 . . . Bda03g00364 . Bpe04g00326 . . . . Cma01g00881 . Car01g00805 . . . . . . . . . . . Cla08g00178 . Cec08g0075 . . Cmu08g0168 Cre08g0158 . . . . . . . Cme09g00121 . . . . . . . . Sed08g1728 Cmo01g00923 . . . . . . Cpe02g00983 Bhi06g00113 Tan10g1838 Cmetu09g1050 . . . . . . . . . . . Lsi08g00178 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007713 2 3 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 2 0 1 1 2 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15641 PF00383 dCMP_cyt_deam_1 1.40E-06 CL0109 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00364 Bda_Chr03 FPKM 0.563307 2.0336 0.238236 1.127148 4.056848 0.873554 3.743891 0.184517 0.0