Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00370 ATGACACTGACAGAGTTGGAGACTCTTCATGTCAAGAAAATGCTGCTTTTGCTCCTAAGAAAAGCTGAGGTACTTGCTGCTGCAGCCAAACTAACCGAAGCACAAGCTGAGCTAAGAGATGCTGAGTTGGATGAAGATATTGGATTATTTATAGGACCTCCACCGCCTGCTGTAGTTGCTGAAGCTGAATCAGCAAACGAGGCTGAGCGATTTGAAGAGGTTACAAGAATCATGGCAGTTGACGCAGCTGATTCTCCATATGATGTCGTGGGGGCAAACCGAAACATGTCCACTGAAAATATTAAAAAAAGATATTGGAAGATTTCCCTTTTGGTGCACCCGGATAAATGTTCTCACCCTCAAGCTCATCAAGCCTTCATTAAATTGAACAAAGCTTTTAAGGAATTACAAGATCCCATAAAGCGAGAAGCTCTAGATGAGAAAATCAAACTCAAGGAAGAAGAAGAAGCATTCAAAATAGAATTGCGAGCAATGCGCGAGGCAGCACAGTGGAGAAGATTGCAAGGTATATCAATGGAAGGTGATGATGAGCTACTGGCTGAGTTTGATGTTAAAGCACCACCAAAAAGAGAAGAATGGATGACAACTCTACCTCCCGAGAGGCAGCCTGGTGTGAGCATGCAATCGTCCAAATTTAGCAGGGGTTCAAAAGAAGGTCGTGGCGATACAAGCATTTGGACCGACACTCCATTAGATAGAGCCCAGAAAGCGAAGATGAATTACTTAGAAGCCTATAATGAAGCAACAGCACTTGCTTCAAAGGCAGAAGAAAAGAAAGCGTCGGATGCAGATTTAGTGGATAAGTACAATAAAGAGAAACGATCGAAATCTTTGGTACAGAAGCATCGTGAGGAGAGTAAAAGTTCAAAGAAAAAATCAGAGATAAAACGAGAGAAAGAAGAGTGGGCTGGGCAACATCCATGGAAGCCATGGGATCGTGAGAAAGACTTGGCTGCAGGGAGGCAATCTGTTAAGCTTGATTCGGAGAACATGGCTCAGGGTCTAACTTCAAGGTTTTCTTCAGGTTCCTTTCAAAGAAACTTCCTATAA 1071 43.04 MTLTELETLHVKKMLLLLLRKAEVLAAAAKLTEAQAELRDAELDEDIGLFIGPPPPAVVAEAESANEAERFEEVTRIMAVDAADSPYDVVGANRNMSTENIKKRYWKISLLVHPDKCSHPQAHQAFIKLNKAFKELQDPIKREALDEKIKLKEEEEAFKIELRAMREAAQWRRLQGISMEGDDELLAEFDVKAPPKREEWMTTLPPERQPGVSMQSSKFSRGSKEGRGDTSIWTDTPLDRAQKAKMNYLEAYNEATALASKAEEKKASDADLVDKYNKEKRSKSLVQKHREESKSSKKKSEIKREKEEWAGQHPWKPWDREKDLAAGRQSVKLDSENMAQGLTSRFSSGSFQRNFL 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3107052 3118383 + Bda016333.1 Bda03g00370 3629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00370 356 Coils Coil 141 168 - -
Bda03g00370 356 Pfam Protein of unknown function (DUF3752) 194 347 IPR022226 -
Bda03g00370 356 PRINTS DnaJ domain signature 105 120 IPR001623 -
Bda03g00370 356 PRINTS DnaJ domain signature 121 141 IPR001623 -
Bda03g00370 356 PRINTS DnaJ domain signature 87 105 IPR001623 -
Bda03g00370 356 SMART dnaj_3 84 141 IPR001623 -
Bda03g00370 356 MobiDBLite consensus disorder prediction 260 356 - -
Bda03g00370 356 MobiDBLite consensus disorder prediction 260 329 - -
Bda03g00370 356 CDD DnaJ 86 138 IPR001623 -
Bda03g00370 356 Pfam DnaJ domain 86 146 IPR001623 -
Bda03g00370 356 Gene3D DnaJ domain 65 168 IPR036869 -
Bda03g00370 356 Coils Coil 24 44 - -
Bda03g00370 356 Coils Coil 238 265 - -
Bda03g00370 356 MobiDBLite consensus disorder prediction 333 356 - -
Bda03g00370 356 MobiDBLite consensus disorder prediction 202 235 - -
Bda03g00370 356 SUPERFAMILY Chaperone J-domain 56 143 IPR036869 -
Bda03g00370 356 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 21 356 - -
Bda03g00370 356 ProSiteProfiles dnaJ domain profile. 85 149 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00370 - - - hbr:110635282 488.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00370 Bda-Chr3:3107052 Bda09g00273 Bda-Chr9:3389333 1.43E-11 dispersed
Bda03g00370 Bda-Chr3:3107052 Bda09g01047 Bda-Chr9:40648769 3.78E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1411 . . . Bda03g00370 . Bpe04g00333 Bma04g00348 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g00995 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011130 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00370 Bda_Chr03 FPKM 2.583933 3.314901 19.557842 22.075026 27.609615 22.623314 26.366217 13.998422 17.055317