Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00390 ATGGAGGGTGATTCTACTGCGTTGAAAGTATCCGGTCAGGAGGTGGCGGTGCCGGTGGAACTGGAAGGTGGGTTAAATTCAGGCAAAGAAGATAAGGGTGAAAATGATGATGGTGACAAAAACTGTGGCGGAAATCGTTGGCCTCGAGAAGAAACATTGACTTTATTGAAGATTCGCTCTGATATGGATTCAGTTTTTCGTGATTCTACTCTGAAAGGTCCACTGTGGGAAGATGTTTCAAGCTCCATTTTTTATTATGGAAGTATTTACAGGAAGCTGGAAGAGCTTGGGTACAGACGAAGAGCGAAGAAATGCAAAGAGAAATTCGAGAATGTATACAAGTATCACAAGAGGACAAAAGATGGAAGAAACGGGAAAAGATCAGACGCAAAATCCTATAAGTTTTTCAATGAAATTGAAGCTCTTGAGAATCTTCACCCTCAACAATGTCTTCCCAAACCTCATCCACCTCTCACAATTCTTCCTCCATGGACGACAATGAACCAAGTTCATTTTCATCAATCCTTCACTCATCCCTCTTCCGCAGAACCCACCAGCACATTACAAAAACCATCGAATTCAAATTTCCCAGCCACTAAATCAAACCTTATCGACAATATTCCAGAAAACTCCATTTCAAAAGACGGCGATTTTCTTCTCTCGAGCTCGACTTCATCGTCGACTGCGTCGGACGAGGAGCTCGGGGGAAGGCTGAAGAGGAAAAGGAAGTGGAAGGACTTCTTTGCGAGGATGACGAAGGAGGTTATGGCCAAACAAGAGGGTTTGCAGATGAAATTCTTGGAGGCATTGGAGAACATTGAACACCAAAGAGTTGTTAGAGAAGAGAGTAGGAGAATTGAAGAAATGGCAAGAATTAACAAAGAACATGAAATGTTAGTCCAAGAAATTTCCGCTGCAACAGCAAAAGATGCCGCTGTGATTTCATTTTTGCAAAATATCATGTCTAACCAGCCGAATCAGACCCAATCAAAAGGCTATCCTCTTTCGATGCCGCCTTTGTTACAATCTCCGCCTCCACCTGCAATTCCACCACCTAAATTAGAGCTCAAAAGGATAAACAATGGCGGAAATTCGAGCTCAAGATGGCCGAAAGCAGAAGTTCAAGCTCTGATAAGCCTTAGAACTGGTCTTGATATGAAATACCAAGAAAATATACCTAAAGGGCCATTGTGGGAGGACATTTCAGCTGCCATGAAAAAGCTCGGATACAATCGGAGCTCTAAGAGATGCAAAGAAAAATGGGAGAATATAAACAAGTACTTCAAAAAAGTGAAGGAAAGCAACAGGAAAAGGAGTGAAGATTCAAAGACTTGCCTGTATTTTGAGCAGCTTGATGCCATATACAAAGAGAAAAAGAAAACGGAAAGCTCATTCATTCCTCAAATGGTGCCCATGATGGTCCAACCAGAACAACAATGGCCTCCGCCCGAGCAAAAACAGTTAATTAGTGATGGAGAAAATGGGGAACATAATGAAGAAGAAGAGGAGGAAGAAGAAGACCAAGACGGTAGCAGCTTTCAGATTGTAACAAATAAACCAGCTTCCATAAACGCCATCATCAATTGA 1587 42.16 MEGDSTALKVSGQEVAVPVELEGGLNSGKEDKGENDDGDKNCGGNRWPREETLTLLKIRSDMDSVFRDSTLKGPLWEDVSSSIFYYGSIYRKLEELGYRRRAKKCKEKFENVYKYHKRTKDGRNGKRSDAKSYKFFNEIEALENLHPQQCLPKPHPPLTILPPWTTMNQVHFHQSFTHPSSAEPTSTLQKPSNSNFPATKSNLIDNIPENSISKDGDFLLSSSTSSSTASDEELGGRLKRKRKWKDFFARMTKEVMAKQEGLQMKFLEALENIEHQRVVREESRRIEEMARINKEHEMLVQEISAATAKDAAVISFLQNIMSNQPNQTQSKGYPLSMPPLLQSPPPPAIPPPKLELKRINNGGNSSSRWPKAEVQALISLRTGLDMKYQENIPKGPLWEDISAAMKKLGYNRSSKRCKEKWENINKYFKKVKESNRKRSEDSKTCLYFEQLDAIYKEKKKTESSFIPQMVPMMVQPEQQWPPPEQKQLISDGENGEHNEEEEEEEEDQDGSSFQIVTNKPASINAIIN 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3228468 3230407 - Bda016353.1 Bda03g00390 3649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00390 528 ProSiteProfiles Myb-like domain profile. 361 425 IPR001005 -
Bda03g00390 528 Pfam Myb/SANT-like DNA-binding domain 367 454 IPR044822 -
Bda03g00390 528 Pfam Myb/SANT-like DNA-binding domain 45 142 IPR044822 -
Bda03g00390 528 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 25 509 - -
Bda03g00390 528 MobiDBLite consensus disorder prediction 473 528 - -
Bda03g00390 528 MobiDBLite consensus disorder prediction 1 47 - -
Bda03g00390 528 SMART sant 365 427 IPR001005 -
Bda03g00390 528 SMART sant 43 115 IPR001005 -
Bda03g00390 528 MobiDBLite consensus disorder prediction 176 207 - -
Bda03g00390 528 MobiDBLite consensus disorder prediction 511 528 - -
Bda03g00390 528 CDD GT1 45 120 - -
Bda03g00390 528 MobiDBLite consensus disorder prediction 25 47 - -
Bda03g00390 528 MobiDBLite consensus disorder prediction 495 510 - -
Bda03g00390 528 Gene3D - 369 430 - -
Bda03g00390 528 Gene3D - 47 118 - -
Bda03g00390 528 CDD GT1 367 432 - -
Bda03g00390 528 Coils Coil 289 309 - -
Bda03g00390 528 PANTHER - 25 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00390 - - - tcc:18592609 449.129
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00390 Bda11g00876 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00390 Bda-Chr3:3228468 Bda11g00876 Bda-Chr11:8614273 1.59E-139 dispersed
Bda07g00837 Bda-Chr7:9830244 Bda03g00390 Bda-Chr3:3228468 8.48E-13 transposed
Bda11g00875 Bda-Chr11:8606211 Bda03g00390 Bda-Chr3:3228468 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1381 Blo01g01727 Blo12g00788 . Bda03g00390 Bpe02g00215 Bpe04g00350 Bma04g00367 Bma01g02505 . . . . . . . . . . . . . . . . Cla08g00363 Cam08g0789 Cec08g0349 Cco08g0454 Clacu08g0501 . Cre08g0330 Cone4ag1502 Cone7ag1446 . . . . . . . . Bda11g00876 . . . . . . Cmo01g01051 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001179 3 2 4 4 4 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 0 2 2 2 2 5 2 0 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15645 PF13837 Myb_DNA-bind_4 6.10E-15 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00390 Bda_Chr03 FPKM 0.0 0.14563 7.207243 8.16686 0.898052 1.187031 1.178035 8.472554 8.725698