Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00391 ATGTCATTCCGCAGCATAGTCCGGGACGTTAGGGATGGATTTGGAAGCTTTTCGAGGCGTAGTTTTGAGGTGGGAATCCCAGGTCACCACAGAGGGAAATCCCACGGGGCCGTCCATGAGATGACCGACCACCCTCTTGTAATCCAAACTAGTCCTTGGGCTAGTCTCCCACCAGAACTACTGAGGGATGTCGTCAAAAGATTGGAAGCCAGTGAGAGTACTTGGCCTTCCCGCAAGCATGTTGTCTCCTGTGCTTCTGTGTGTAGGTCATGGAGAGAAATGTGCCAGGAAATTGTCCAAAATCCGGAGTTTTCTGGCAAGATCACGTTTCCAGTCTCCTTGAAGCAGCCTGGGTCTCGAGACGGAACAATTCAGTGCTTCATTAAGAGGGATAAATCTAATTTAACTTACCGGCTTTTCCTTTGCCTTAGTCCCACTTTACTTGTTGAGAATGGAAAATTTCTCCTTTCAGCGAAACGAACGAGGAGAACTACCTGCACCGAATACGTGATCTCCATGGATGCGGATAATATATCAAGATCAAGCTGCACATATATCGGAAAGATAAGGTCAAATCTTCTGGGGACGAAATTCTTAATATACGATACGCAGCCTCCTTACAACAGCGTGCAACTTTCTCCACCAGGTCGAAGCCGAAGACTTACCTCGAAGAAAGTTTCTCCGAAAGTCCCTACTGGTAATTACAATATTGCCGAGGTTACATACGAGCTGAATGTTTTAGGGACGCGTGGCCCACGAAGAATGCACTGCACCATGCATTCGATCCCCGTCTCGGCCATCGAGCCAGGAGGCACCATCCCCGGTCAGCCTGAGCTCCTCCCCCGTTCCCTCGAGGATTCCTTTCGAAGCATTTCCTTCTCAAAGTCGGTTGATAACAGCAGTGAGTTTAGCAGTGCTCGCTTCTCCGACATTGTGAGGCTGAATGAAGATCAAGAAGAACATGAAGAGGATGAGTCTAAAGAAAAGATGAGACCCTTAATTCTCAAGAACAAATCCCCTCGCTGGCACGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTGACTGTGGCCTCGGTCAAGAACTTTCAGCTGATAGCGGCTGAGGAATCTCCTCCTGCCCAGCCTGCTCAGGCTGTCCAGCCAGACCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGAAAAGATCTGTTTACCATGGATTACAGATATCCTTTGTCTGCATTTCAAGCTTTTGCCCTCTGTTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG 1290 48.53 MSFRSIVRDVRDGFGSFSRRSFEVGIPGHHRGKSHGAVHEMTDHPLVIQTSPWASLPPELLRDVVKRLEASESTWPSRKHVVSCASVCRSWREMCQEIVQNPEFSGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYRLFLCLSPTLLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSCTYIGKIRSNLLGTKFLIYDTQPPYNSVQLSPPGRSRRLTSKKVSPKVPTGNYNIAEVTYELNVLGTRGPRRMHCTMHSIPVSAIEPGGTIPGQPELLPRSLEDSFRSISFSKSVDNSSEFSSARFSDIVRLNEDQEEHEEDESKEKMRPLILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAEESPPAQPAQAVQPDHDKIILQFGKVGKDLFTMDYRYPLSAFQAFALCLSSFDTKLACE 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3234059 3237298 + Bda016354.1 Bda03g00391 3650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00391 429 Pfam Tub family 114 424 IPR000007 -
Bda03g00391 429 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 429 - -
Bda03g00391 429 PANTHER TUBBY-RELATED 1 429 - -
Bda03g00391 429 ProSitePatterns Tub family signature 1. 353 366 IPR018066 -
Bda03g00391 429 Pfam F-box domain 53 101 IPR001810 GO:0005515
Bda03g00391 429 Gene3D Tubby Protein; Chain A 285 429 IPR025659 -
Bda03g00391 429 Gene3D Tubby Protein; Chain A 110 284 IPR025659 -
Bda03g00391 429 Gene3D - 48 101 - -
Bda03g00391 429 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Bda03g00391 429 PRINTS Tubby superfamily signature 335 352 IPR000007 -
Bda03g00391 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Bda03g00391 429 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bda03g00391 429 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bda03g00391 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Bda03g00391 429 PRINTS Tubby superfamily signature 353 369 IPR000007 -
Bda03g00391 429 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Bda03g00391 429 SUPERFAMILY Tubby C-terminal domain-like 102 429 IPR025659 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00391 Bda11g00874 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00391 Bda-Chr3:3234059 Bda08g00735 Bda-Chr8:8827647 0 dispersed
Bda03g01209 Bda-Chr3:14897856 Bda03g00391 Bda-Chr3:3234059 5.86E-112 dispersed
Bda05g00417 Bda-Chr5:49766357 Bda03g00391 Bda-Chr3:3234059 1.97E-36 transposed
Bda15g00463 Bda-Chr15:7706302 Bda03g00391 Bda-Chr3:3234059 0 transposed
Bda11g00874 Bda-Chr11:8595125 Bda03g00391 Bda-Chr3:3234059 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15646 PF01167 Tub 1.20E-112 CL0395 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00391 K19600 - qsu:111992792 732.25