Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00391 ATGTCATTCCGCAGCATAGTCCGGGACGTTAGGGATGGATTTGGAAGCTTTTCGAGGCGTAGTTTTGAGGTGGGAATCCCAGGTCACCACAGAGGGAAATCCCACGGGGCCGTCCATGAGATGACCGACCACCCTCTTGTAATCCAAACTAGTCCTTGGGCTAGTCTCCCACCAGAACTACTGAGGGATGTCGTCAAAAGATTGGAAGCCAGTGAGAGTACTTGGCCTTCCCGCAAGCATGTTGTCTCCTGTGCTTCTGTGTGTAGGTCATGGAGAGAAATGTGCCAGGAAATTGTCCAAAATCCGGAGTTTTCTGGCAAGATCACGTTTCCAGTCTCCTTGAAGCAGCCTGGGTCTCGAGACGGAACAATTCAGTGCTTCATTAAGAGGGATAAATCTAATTTAACTTACCGGCTTTTCCTTTGCCTTAGTCCCACTTTACTTGTTGAGAATGGAAAATTTCTCCTTTCAGCGAAACGAACGAGGAGAACTACCTGCACCGAATACGTGATCTCCATGGATGCGGATAATATATCAAGATCAAGCTGCACATATATCGGAAAGATAAGGTCAAATCTTCTGGGGACGAAATTCTTAATATACGATACGCAGCCTCCTTACAACAGCGTGCAACTTTCTCCACCAGGTCGAAGCCGAAGACTTACCTCGAAGAAAGTTTCTCCGAAAGTCCCTACTGGTAATTACAATATTGCCGAGGTTACATACGAGCTGAATGTTTTAGGGACGCGTGGCCCACGAAGAATGCACTGCACCATGCATTCGATCCCCGTCTCGGCCATCGAGCCAGGAGGCACCATCCCCGGTCAGCCTGAGCTCCTCCCCCGTTCCCTCGAGGATTCCTTTCGAAGCATTTCCTTCTCAAAGTCGGTTGATAACAGCAGTGAGTTTAGCAGTGCTCGCTTCTCCGACATTGTGAGGCTGAATGAAGATCAAGAAGAACATGAAGAGGATGAGTCTAAAGAAAAGATGAGACCCTTAATTCTCAAGAACAAATCCCCTCGCTGGCACGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTGACTGTGGCCTCGGTCAAGAACTTTCAGCTGATAGCGGCTGAGGAATCTCCTCCTGCCCAGCCTGCTCAGGCTGTCCAGCCAGACCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGAAAAGATCTGTTTACCATGGATTACAGATATCCTTTGTCTGCATTTCAAGCTTTTGCCCTCTGTTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG 1290 48.53 MSFRSIVRDVRDGFGSFSRRSFEVGIPGHHRGKSHGAVHEMTDHPLVIQTSPWASLPPELLRDVVKRLEASESTWPSRKHVVSCASVCRSWREMCQEIVQNPEFSGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYRLFLCLSPTLLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSCTYIGKIRSNLLGTKFLIYDTQPPYNSVQLSPPGRSRRLTSKKVSPKVPTGNYNIAEVTYELNVLGTRGPRRMHCTMHSIPVSAIEPGGTIPGQPELLPRSLEDSFRSISFSKSVDNSSEFSSARFSDIVRLNEDQEEHEEDESKEKMRPLILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAEESPPAQPAQAVQPDHDKIILQFGKVGKDLFTMDYRYPLSAFQAFALCLSSFDTKLACE 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3234059 3237298 + Bda016354.1 Bda03g00391 3650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00391 429 Pfam Tub family 114 424 IPR000007 -
Bda03g00391 429 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 429 - -
Bda03g00391 429 PANTHER TUBBY-RELATED 1 429 - -
Bda03g00391 429 ProSitePatterns Tub family signature 1. 353 366 IPR018066 -
Bda03g00391 429 Pfam F-box domain 53 101 IPR001810 GO:0005515
Bda03g00391 429 Gene3D Tubby Protein; Chain A 285 429 IPR025659 -
Bda03g00391 429 Gene3D Tubby Protein; Chain A 110 284 IPR025659 -
Bda03g00391 429 Gene3D - 48 101 - -
Bda03g00391 429 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Bda03g00391 429 PRINTS Tubby superfamily signature 335 352 IPR000007 -
Bda03g00391 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Bda03g00391 429 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bda03g00391 429 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bda03g00391 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Bda03g00391 429 PRINTS Tubby superfamily signature 353 369 IPR000007 -
Bda03g00391 429 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Bda03g00391 429 SUPERFAMILY Tubby C-terminal domain-like 102 429 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00391 K19600 TUB, TULP; tubby and related proteins - qsu:111992792 732.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00391 Bda11g00874 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00391 Bda-Chr3:3234059 Bda08g00735 Bda-Chr8:8827647 0 dispersed
Bda03g01209 Bda-Chr3:14897856 Bda03g00391 Bda-Chr3:3234059 5.86E-112 dispersed
Bda05g00417 Bda-Chr5:49766357 Bda03g00391 Bda-Chr3:3234059 1.97E-36 transposed
Bda15g00463 Bda-Chr15:7706302 Bda03g00391 Bda-Chr3:3234059 0 transposed
Bda11g00874 Bda-Chr11:8595125 Bda03g00391 Bda-Chr3:3234059 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1377 Blo01g01728 Blo12g00786 . Bda03g00391 Bpe02g00213 Bpe04g00353 Bma04g00369 Bma01g02507 Cmo04g02565 Cmo15g00602 . . . . . . Cpe13g00683 Bhi04g01774 Tan11g1139 . . . . . Cla08g00355 Cam08g0782 Cec08g0347 Cco08g0447 Clacu08g0497 . Cre08g0325 . . . . . . . Cme03g00315 . . Bda11g00874 . . . . . . . . . . Car04g02358 Car15g00552 Cpe01g02118 . . . . . . . . . . . . . . . Lsi08g00555 . Chy03g00507 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00735 . 1 426 TUB Transcription Factor Family AT1G76900 70.3 8.0e-173 603.6
Bda08g00739 . 1 426 TUB Transcription Factor Family AT1G76900 70.1 1.5e-171 599.4
Bda03g00391 CCT 1 429 TUB Transcription Factor Family AT1G76900 69.2 5.3e-169 590.9
Bda15g00463 . 1 424 TUB Transcription Factor Family AT1G76900 68.0 1.2e-163 573.2
Bda11g00874 CCT 1 425 TUB Transcription Factor Family AT1G76900 61.5 1.2e-144 510.0
Bda03g00263 BCT 1 413 TUB Transcription Factor Family AT1G76900 51.4 2.5e-118 422.5
Bda11g01863 . 1 408 TUB Transcription Factor Family AT1G76900 51.1 4.6e-112 401.7
Bda12g00817 . 50 196 TUB Transcription Factor Family AT1G76900 51.0 8.9e-39 158.3
Bda08g00735 . 173 426 TUB Transcription Factor Family AT1G25280 71.5 1.7e-98 355.9
Bda08g00739 . 173 426 TUB Transcription Factor Family AT1G25280 71.2 1.4e-97 352.8
Bda03g00391 CCT 173 429 TUB Transcription Factor Family AT1G25280 66.3 2.4e-92 335.5
Bda15g00463 . 174 424 TUB Transcription Factor Family AT1G25280 68.7 2.9e-90 328.6
Bda11g00874 CCT 191 425 TUB Transcription Factor Family AT1G25280 67.1 9.7e-86 313.5
Bda01g00462 . 176 413 TUB Transcription Factor Family AT1G25280 55.5 4.0e-71 265.0
Bda01g00525 BCT 176 413 TUB Transcription Factor Family AT1G25280 55.5 4.0e-71 265.0
Bda08g00279 . 156 394 TUB Transcription Factor Family AT1G25280 52.6 4.8e-69 258.1
Bda03g00263 BCT 177 413 TUB Transcription Factor Family AT1G25280 54.8 1.8e-68 256.1
Bda03g01209 . 173 417 TUB Transcription Factor Family AT1G25280 50.4 1.3e-66 250.0
Bda11g01863 . 175 408 TUB Transcription Factor Family AT1G25280 53.8 5.0e-66 248.1
Bda03g01209 . 116 417 TUB Transcription Factor Family AT5G18680 60.2 2.8e-94 342.0
Bda08g00279 . 98 394 TUB Transcription Factor Family AT5G18680 60.3 4.1e-93 338.2
Bda08g00735 . 112 426 TUB Transcription Factor Family AT5G18680 51.7 2.3e-80 295.8
Bda15g00463 . 112 424 TUB Transcription Factor Family AT5G18680 51.1 8.8e-80 293.9
Bda08g00739 . 112 426 TUB Transcription Factor Family AT5G18680 50.8 2.0e-79 292.7
Bda01g00462 . 113 413 TUB Transcription Factor Family AT5G18680 50.3 8.3e-78 287.3
Bda01g00525 BCT 113 413 TUB Transcription Factor Family AT5G18680 50.3 8.3e-78 287.3
Bda03g00263 BCT 114 413 TUB Transcription Factor Family AT5G18680 50.3 7.0e-77 284.3
Bda11g01863 . 1 408 TUB Transcription Factor Family AT2G18280 61.6 1.4e-133 473.0
Bda03g00263 BCT 1 413 TUB Transcription Factor Family AT2G18280 55.2 1.9e-122 436.0
Bda01g00525 BCT 1 413 TUB Transcription Factor Family AT2G18280 56.7 4.0e-120 428.3
Bda01g00462 . 1 413 TUB Transcription Factor Family AT2G18280 56.7 5.2e-120 427.9
Bda03g00391 CCT 1 429 TUB Transcription Factor Family AT2G18280 52.3 3.2e-117 418.7
Bda08g00735 . 1 426 TUB Transcription Factor Family AT2G18280 51.2 5.6e-114 407.9
Bda15g00463 . 1 424 TUB Transcription Factor Family AT2G18280 52.0 7.3e-114 407.5
Bda08g00739 . 1 426 TUB Transcription Factor Family AT2G18280 51.0 9.5e-114 407.1
Bda08g00279 . 1 394 TUB Transcription Factor Family AT2G18280 53.2 2.3e-112 402.5
Bda03g01209 . 116 417 TUB Transcription Factor Family AT2G18280 52.3 8.1e-81 297.7
Bda08g00279 . 1 394 TUB Transcription Factor Family AT2G47900 67.8 5.3e-160 560.8
Bda03g00391 CCT 1 429 TUB Transcription Factor Family AT2G47900 55.6 2.1e-132 469.2
Bda15g00463 . 1 424 TUB Transcription Factor Family AT2G47900 56.9 3.0e-131 465.3
Bda08g00735 . 1 426 TUB Transcription Factor Family AT2G47900 55.5 2.6e-130 462.2
Bda08g00739 . 1 426 TUB Transcription Factor Family AT2G47900 55.3 2.6e-130 462.2
Bda03g01209 . 116 417 TUB Transcription Factor Family AT2G47900 69.5 2.6e-122 435.6
Bda01g00525 BCT 1 413 TUB Transcription Factor Family AT2G47900 53.9 3.8e-118 421.8
Bda11g01863 . 1 408 TUB Transcription Factor Family AT2G47900 55.6 5.0e-118 421.4
Bda01g00462 . 1 413 TUB Transcription Factor Family AT2G47900 53.9 5.0e-118 421.4
Bda03g00263 BCT 1 413 TUB Transcription Factor Family AT2G47900 53.3 7.3e-117 417.5
Bda11g00874 CCT 1 425 TUB Transcription Factor Family AT2G47900 50.2 1.6e-111 399.8
Bda12g00817 . 48 196 TUB Transcription Factor Family AT2G47900 51.0 1.6e-39 160.6
Bda03g00391 CCT 65 429 TUB Transcription Factor Family AT1G43640 65.8 1.8e-143 505.8
Bda08g00735 . 65 426 TUB Transcription Factor Family AT1G43640 67.4 1.8e-143 505.8
Bda08g00739 . 65 426 TUB Transcription Factor Family AT1G43640 67.1 1.5e-142 502.7
Bda15g00463 . 65 424 TUB Transcription Factor Family AT1G43640 65.4 1.3e-138 489.6
Bda11g00874 CCT 65 425 TUB Transcription Factor Family AT1G43640 60.3 2.1e-123 439.1
Bda08g00279 . 47 394 TUB Transcription Factor Family AT1G43640 51.6 2.0e-102 369.4
Bda03g00263 BCT 67 413 TUB Transcription Factor Family AT1G43640 51.0 4.7e-99 358.2
Bda11g01863 . 66 408 TUB Transcription Factor Family AT1G43640 52.1 1.7e-96 349.7
Bda03g00263 BCT 25 413 TUB Transcription Factor Family AT1G47270 63.5 6.9e-133 470.7
Bda01g00525 BCT 31 413 TUB Transcription Factor Family AT1G47270 61.8 2.0e-132 469.2
Bda01g00462 . 31 413 TUB Transcription Factor Family AT1G47270 61.8 2.6e-132 468.8
Bda11g01863 . 1 407 TUB Transcription Factor Family AT1G47270 57.9 3.8e-123 438.3
Bda08g00735 . 48 426 TUB Transcription Factor Family AT1G47270 55.4 3.9e-112 401.7
Bda08g00739 . 48 426 TUB Transcription Factor Family AT1G47270 55.4 3.9e-112 401.7
Bda15g00463 . 31 424 TUB Transcription Factor Family AT1G47270 52.6 3.3e-111 398.7
Bda03g00391 CCT 31 429 TUB Transcription Factor Family AT1G47270 52.2 1.3e-110 396.7
Bda11g00874 CCT 48 425 TUB Transcription Factor Family AT1G47270 51.6 1.4e-98 356.7
Bda12g00817 . 1 201 TUB Transcription Factor Family AT1G53320 54.2 4.9e-51 198.7
Bda08g00279 . 98 394 TUB Transcription Factor Family AT3G06380 60.8 2.0e-92 335.9
Bda03g01209 . 117 417 TUB Transcription Factor Family AT3G06380 60.5 7.5e-92 334.0
Bda08g00739 . 116 426 TUB Transcription Factor Family AT3G06380 52.1 6.6e-80 294.3
Bda08g00735 . 116 426 TUB Transcription Factor Family AT3G06380 51.8 1.9e-79 292.7
Bda01g00462 . 117 413 TUB Transcription Factor Family AT3G06380 52.2 1.6e-78 289.7
Bda01g00525 BCT 117 413 TUB Transcription Factor Family AT3G06380 52.2 1.6e-78 289.7
Bda15g00463 . 116 424 TUB Transcription Factor Family AT3G06380 50.5 2.3e-77 285.8
Bda03g00263 BCT 118 413 TUB Transcription Factor Family AT3G06380 52.2 9.8e-76 280.4
Bda11g01863 . 117 408 TUB Transcription Factor Family AT3G06380 51.2 1.2e-73 273.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15646 PF01167 Tub 1.20E-112 CL0395 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00391 Bda_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 7.60197 7.136075