Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda03g00391 | ATGTCATTCCGCAGCATAGTCCGGGACGTTAGGGATGGATTTGGAAGCTTTTCGAGGCGTAGTTTTGAGGTGGGAATCCCAGGTCACCACAGAGGGAAATCCCACGGGGCCGTCCATGAGATGACCGACCACCCTCTTGTAATCCAAACTAGTCCTTGGGCTAGTCTCCCACCAGAACTACTGAGGGATGTCGTCAAAAGATTGGAAGCCAGTGAGAGTACTTGGCCTTCCCGCAAGCATGTTGTCTCCTGTGCTTCTGTGTGTAGGTCATGGAGAGAAATGTGCCAGGAAATTGTCCAAAATCCGGAGTTTTCTGGCAAGATCACGTTTCCAGTCTCCTTGAAGCAGCCTGGGTCTCGAGACGGAACAATTCAGTGCTTCATTAAGAGGGATAAATCTAATTTAACTTACCGGCTTTTCCTTTGCCTTAGTCCCACTTTACTTGTTGAGAATGGAAAATTTCTCCTTTCAGCGAAACGAACGAGGAGAACTACCTGCACCGAATACGTGATCTCCATGGATGCGGATAATATATCAAGATCAAGCTGCACATATATCGGAAAGATAAGGTCAAATCTTCTGGGGACGAAATTCTTAATATACGATACGCAGCCTCCTTACAACAGCGTGCAACTTTCTCCACCAGGTCGAAGCCGAAGACTTACCTCGAAGAAAGTTTCTCCGAAAGTCCCTACTGGTAATTACAATATTGCCGAGGTTACATACGAGCTGAATGTTTTAGGGACGCGTGGCCCACGAAGAATGCACTGCACCATGCATTCGATCCCCGTCTCGGCCATCGAGCCAGGAGGCACCATCCCCGGTCAGCCTGAGCTCCTCCCCCGTTCCCTCGAGGATTCCTTTCGAAGCATTTCCTTCTCAAAGTCGGTTGATAACAGCAGTGAGTTTAGCAGTGCTCGCTTCTCCGACATTGTGAGGCTGAATGAAGATCAAGAAGAACATGAAGAGGATGAGTCTAAAGAAAAGATGAGACCCTTAATTCTCAAGAACAAATCCCCTCGCTGGCACGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTGACTGTGGCCTCGGTCAAGAACTTTCAGCTGATAGCGGCTGAGGAATCTCCTCCTGCCCAGCCTGCTCAGGCTGTCCAGCCAGACCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGAAAAGATCTGTTTACCATGGATTACAGATATCCTTTGTCTGCATTTCAAGCTTTTGCCCTCTGTTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG | 1290 | 48.53 | MSFRSIVRDVRDGFGSFSRRSFEVGIPGHHRGKSHGAVHEMTDHPLVIQTSPWASLPPELLRDVVKRLEASESTWPSRKHVVSCASVCRSWREMCQEIVQNPEFSGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYRLFLCLSPTLLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSCTYIGKIRSNLLGTKFLIYDTQPPYNSVQLSPPGRSRRLTSKKVSPKVPTGNYNIAEVTYELNVLGTRGPRRMHCTMHSIPVSAIEPGGTIPGQPELLPRSLEDSFRSISFSKSVDNSSEFSSARFSDIVRLNEDQEEHEEDESKEKMRPLILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAEESPPAQPAQAVQPDHDKIILQFGKVGKDLFTMDYRYPLSAFQAFALCLSSFDTKLACE | 429 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3234059 | 3237298 | + | Bda016354.1 | Bda03g00391 | 3650 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda03g00391 | 429 | Pfam | Tub family | 114 | 424 | IPR000007 | - | |
Bda03g00391 | 429 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 429 | - | - | |
Bda03g00391 | 429 | PANTHER | TUBBY-RELATED | 1 | 429 | - | - | |
Bda03g00391 | 429 | ProSitePatterns | Tub family signature 1. | 353 | 366 | IPR018066 | - | |
Bda03g00391 | 429 | Pfam | F-box domain | 53 | 101 | IPR001810 | GO:0005515 | |
Bda03g00391 | 429 | Gene3D | Tubby Protein; Chain A | 285 | 429 | IPR025659 | - | |
Bda03g00391 | 429 | Gene3D | Tubby Protein; Chain A | 110 | 284 | IPR025659 | - | |
Bda03g00391 | 429 | Gene3D | - | 48 | 101 | - | - | |
Bda03g00391 | 429 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Bda03g00391 | 429 | PRINTS | Tubby superfamily signature | 335 | 352 | IPR000007 | - | |
Bda03g00391 | 429 | PRINTS | Tubby superfamily signature | 386 | 405 | IPR000007 | - | |
Bda03g00391 | 429 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Bda03g00391 | 429 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Bda03g00391 | 429 | PRINTS | Tubby superfamily signature | 407 | 429 | IPR000007 | - | |
Bda03g00391 | 429 | PRINTS | Tubby superfamily signature | 353 | 369 | IPR000007 | - | |
Bda03g00391 | 429 | SUPERFAMILY | F-box domain | 48 | 96 | IPR036047 | GO:0005515 | |
Bda03g00391 | 429 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 429 | IPR025659 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda03g00391 | Bda11g00874 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00391 | Bda-Chr3:3234059 | Bda08g00735 | Bda-Chr8:8827647 | 0 | dispersed | |
Bda03g01209 | Bda-Chr3:14897856 | Bda03g00391 | Bda-Chr3:3234059 | 5.86E-112 | dispersed | |
Bda05g00417 | Bda-Chr5:49766357 | Bda03g00391 | Bda-Chr3:3234059 | 1.97E-36 | transposed | |
Bda15g00463 | Bda-Chr15:7706302 | Bda03g00391 | Bda-Chr3:3234059 | 0 | transposed | |
Bda11g00874 | Bda-Chr11:8595125 | Bda03g00391 | Bda-Chr3:3234059 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15646 | PF01167 | Tub | 1.20E-112 | CL0395 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda03g00391 | K19600 | - | qsu:111992792 | 732.25 |