Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00392 ATGCCAGCGACCGATTACCAGGGTTCCTCTGCTAGTTTTGGTGGTTTTGGTCGATCAATTTTGAGTTTTCGGCGTGACCAGATTCACTCGATGGAAGCTTCGCACGAGGCCTCGTCAATGGAGCTCGATCTCGATTCTTTTCAGAAGCAAGTGACGGACCGGTTTCTCGAACTCTCCTCCATTGGCAACGACGATCTGCTTTCTCTCTCGTGGATTCTGAAGCTTCTCGATGTTTTCCTTTCCTGCCAAGAGGAGTTCAGAAGCATTCTCTTCACCTACAGATCTCAAATCGTCAAGCCTCCAATGGACCGATTGATTGCCGATTACCTGGATCGAAGCGTCAAGACGCTTGACGTCTGTAATGCTGTCCGGGATGGGATTGATCAGCTCAGGCAATGGCAGAAGCTGTTAGAGATCGTACTCATCGCGTTGAACGACAAGAATAATCGGAAAACTCTCTGCGAAGGCCAATTTCGCCGCGCCAAGAAGGCCCTGGTCGATTTAGCCATATTCATGCTTGACGATAAGGATTCAAATCCCGCGATTGTTTCCCACAGAAACCGATCGTTTGGCCGACACAATGCCTCCCGAGATAATCGATTTTCGGGACATTCTCGTTCCCTTTCTTGGAGCGTTTCGAGAACGTGGTCTGCTGCTAGGCAGCTCCAAGCAATTGGAAACAATCTGGCTTACCCAAGGGCAAGCGATCTCCTGTCAACGAATGGCTTCGCAGCCCCTGTTTACACTATGAACATGGTTCTTTTGTTCGTAACGTGGGCTTTAGTTGCCGCGATTCCTTGCCAAGACCGGGGTCTACAGGTTCATTTTTCTGTTCCCCGGCAATTCTCGTGGGGGGCTCCGATGATTGCTCTACACGATCGAATCATGGAGGAATCCAAGAAGCGAGAGAGGAAAAATTCTTGTGGGTTATTGAAGGAGATTCATCAGTTAGAGAAATGCACTCGCGTGATGAACGAACAGCTAGAGTTTCCGTTGACGGAAGAGAAGGAAGAAGAGGTGAAGCAGAGAGTGGAAGAGCTATCAAAAGTTTGTGACGCCATGAAAGCCGGCCTGGACCCTCTGGAGCGGCAGGTGAGAGAGGTTTTCCGCCGGATTGTGCGCAGCCGAACCGAAGGGAATTCCTGA 1146 50.09 MPATDYQGSSASFGGFGRSILSFRRDQIHSMEASHEASSMELDLDSFQKQVTDRFLELSSIGNDDLLSLSWILKLLDVFLSCQEEFRSILFTYRSQIVKPPMDRLIADYLDRSVKTLDVCNAVRDGIDQLRQWQKLLEIVLIALNDKNNRKTLCEGQFRRAKKALVDLAIFMLDDKDSNPAIVSHRNRSFGRHNASRDNRFSGHSRSLSWSVSRTWSAARQLQAIGNNLAYPRASDLLSTNGFAAPVYTMNMVLLFVTWALVAAIPCQDRGLQVHFSVPRQFSWGAPMIALHDRIMEESKKRERKNSCGLLKEIHQLEKCTRVMNEQLEFPLTEEKEEEVKQRVEELSKVCDAMKAGLDPLERQVREVFRRIVRSRTEGNS 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3238759 3239904 + Bda016355.1 Bda03g00392 3651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00392 381 PANTHER OS04G0688000 PROTEIN 1 379 - -
Bda03g00392 381 PANTHER BPS1-LIKE PROTEIN 1 379 - -
Bda03g00392 381 Pfam Protein ROH1-like 12 379 IPR008511 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00392 - - - csv:101202838 502.671
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00392 Bda11g00873 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00392 Bda-Chr3:3238759 Bda06g00118 Bda-Chr6:1862145 3.09E-105 dispersed
Bda11g00873 Bda-Chr11:8590541 Bda03g00392 Bda-Chr3:3238759 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1374 Blo01g01729 Blo12g00785 . Bda03g00392 Bpe02g00212 Bpe04g00354 Bma04g00370 Bma01g02508 . . . . . . . Cpe06g00909 . . . . . . . . . . . . . . . . . Cone17ag0783 . . . . . . . Bda11g00873 . . . . . . . . . . . . . . Bhi09g01534 . . . . Mch11g1487 . . . . . . . . . . . Cme01g00793
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001452 2 8 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 2 2 2 2 2 2 2 1 2 4 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00392 Bda_Chr03 FPKM 6.961437 7.20039 5.605525 6.920358 18.104036 14.509323 18.630415 5.150403 4.279697