Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00403 ATGGTCAAGAAGCGCAAGTCTACCGCCACTAGCCTCGACGAGGTCGATCGAACCATGTACGCCTCGTTCTGCAGCGCAGCCAACTCCCTCTCGCAGCTTTATACTCAAGCTATGAACCATCAGAAGTTATCCTTCCAAGCAGGGGAACGTCACGCTATGGAAAAACTTTATCAGTGGATCTGGAGACAGCAAGAAGGAGGATCAAGAGTAACAACGAGTGATGTACTTAGTTACATTCAGAACGAGTTGGATTATAATGGGGAGGAGCCATCAATGTCTCCAAGAGCACCTGTTCAGCATCAGCACTCTCAACCTTTTTCGAACTCGGGATTTCCTTTGTCTTTTGGATTTTCAGGTCCAACAGCTACAGGACAAGGAAATCGATCTGAACACTCTGATAATCAATCAAAAAATTCAGTCTTCTCAAATGCATTGTCAAGTCCTGTTCGCCGGAGTCTGCAGGACTATCAACTTGCTCAGTGCGTTTACAACCCAAACAGCGGTGGTCTTCACTCGGGCAATGGTGTTCGGAGCAATGAACCTAGCTTTCTTCAGCCTCAAACTGGGAATACAAATCCTGTATGTTCAAATGATCATTCAATGGAAGATAGCCCAAATGAATCAACTTACTAA 633 45.34 MVKKRKSTATSLDEVDRTMYASFCSAANSLSQLYTQAMNHQKLSFQAGERHAMEKLYQWIWRQQEGGSRVTTSDVLSYIQNELDYNGEEPSMSPRAPVQHQHSQPFSNSGFPLSFGFSGPTATGQGNRSEHSDNQSKNSVFSNALSSPVRRSLQDYQLAQCVYNPNSGGLHSGNGVRSNEPSFLQPQTGNTNPVCSNDHSMEDSPNESTY 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3364121 3366655 - Bda016367.1 Bda03g00403 3662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00403 210 PANTHER NUCLEAR RECEPTOR FAMILY 2 GROUP C PROTEIN 1 205 - -
Bda03g00403 210 PANTHER HOLOCARBOXYLASE SYNTHETASE 1 205 - -
Bda03g00403 210 MobiDBLite consensus disorder prediction 167 210 - -
Bda03g00403 210 MobiDBLite consensus disorder prediction 86 146 - -
Bda03g00403 210 MobiDBLite consensus disorder prediction 96 146 - -
Bda03g00403 210 PIRSF UCP009193 1 203 IPR016549 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00403 - - - hbr:110652960 300.827
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00403 Bda11g00863 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01346 Bda-Chr11:15079396 Bda03g00403 Bda-Chr3:3364121 2.19E-54 transposed
Bda11g00863 Bda-Chr11:8508786 Bda03g00403 Bda-Chr3:3364121 8.64E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1340 Blo01g01741 Blo12g00775 . Bda03g00403 Bpe02g00202 Bpe04g00367 . Bma01g02519 . . . . Car01g00860 . . Cpe06g00910 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00863 . . . . . Sed07g2827 . . . . . . . . Bhi09g01539 Tan01g3074 Cmetu01g0774 . . Mch11g1488 . Cla09g00950 Cam09g1001 Cec09g1004 Cco09g1014 . . Cre09g0965 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003826 3 1 2 2 2 1 3 1 2 1 1 1 2 0 1 3 1 3 2 1 1 1 1 1 2 1 1 1 1 2 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00403 Bda_Chr03 FPKM 0.964539 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0