Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00406 ATTAAGCATTCCAAAAATTTCAAACCAGAAGATATGGATATCAATATAGAAGGGAAAAATTGTATTGTTACCGGAGCAAATTCAGGGATTGGTTACTCAACTGCAGAGGGTCTTGCTTCGCGTGGAGCTACTGTCTATTTGGTATGTCGTAATAAGGAAAAGGGAGAAGCTGCTCTATCTCAGATTAAGTCGACCACGGGCAACCAAAATCTTCATTTGGAGGTCTGTGATCTTTCATCTATCAGCGAGATCAAGTCTTTCGTGTCAAGTTTTTCGTCGAAAGATCTCCCAGTTCATGTCTTGGTAAACAATGCTGGGTTGCTTGAAAATAAACGGATTACGACATCACAAGGGTTCGAGTTGAATTTCGCTGTAAATGTCTTAGGCACTTACACCATGACAGAACTGATGCTACCATTGCTAGAGAAAGCTGCTCCAGATGCTCGGGTCATCACTGTTGCTTCTGGTGGAATGTACTTATCTCCCCTTACCGACAATCTACAGTTCGATGAAAGCGAGTTTGATGGACTTCAACAGTATGCTCGAAACAAGCGAGTTCAGGTGGCACTTACTGAAAAATGGGCTGAACTGTACGAGAACAAAGGAATTGGTTTCTACTCAATGCACCCTGGTTGGGCAGATACGCCTGGAGTTGCTAAAAGTTTGCCTTCTTTGTCGGAATGGCTTTCTGGTTCATATAGAAAAAGCGCAGAAGGAGCTGATACAGTCATTTGGCTAAGCTTACAACCAAAAGAGAGATTGGTATCAGGAGAATTCTATCTCGACAGAGCCAAGGCTCCAAAACATCTGATGTTTGCCGCCACCAAGTCGTCTCCTGCCGGAATCGACTCGATCATTTCCACCCTTCGTACTTTAGCCGCCATCTCTTCATGA 894 43.74 IKHSKNFKPEDMDINIEGKNCIVTGANSGIGYSTAEGLASRGATVYLVCRNKEKGEAALSQIKSTTGNQNLHLEVCDLSSISEIKSFVSSFSSKDLPVHVLVNNAGLLENKRITTSQGFELNFAVNVLGTYTMTELMLPLLEKAAPDARVITVASGGMYLSPLTDNLQFDESEFDGLQQYARNKRVQVALTEKWAELYENKGIGFYSMHPGWADTPGVAKSLPSLSEWLSGSYRKSAEGADTVIWLSLQPKERLVSGEFYLDRAKAPKHLMFAATKSSPAGIDSIISTLRTLAAISS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3377835 3379730 - Bda016370.1 Bda03g00406 3665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00406 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 263 IPR036291 -
Bda03g00406 297 PRINTS Glucose/ribitol dehydrogenase family signature 201 218 IPR002347 -
Bda03g00406 297 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Bda03g00406 297 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
Bda03g00406 297 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 1 286 - -
Bda03g00406 297 Gene3D - 5 278 - -
Bda03g00406 297 Pfam short chain dehydrogenase 19 220 IPR002347 -
Bda03g00406 297 PANTHER RETINOL DEHYDROGENASE 1 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00406 K11168 DHRS12; dehydrogenase/reductase SDR family member 12 [EC:1.1.-.-] - qsu:112014478 463.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00406 Bda-Chr3:3377835 Bda03g00408 Bda-Chr3:3386900 2.16E-132 dispersed
Bda14g00802 Bda-Chr14:6178759 Bda03g00406 Bda-Chr3:3377835 9.97E-14 dispersed
Bda03g00406 Bda-Chr3:3377835 Bda03g00407 Bda-Chr3:3382077 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1333 . Blo12g00773 . Bda03g00406 . Bpe04g00370 Bma04g00386 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0769 Cone20ag0359 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g00777
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009720 3 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 1 1 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00406 Bda_Chr03 FPKM 6.900298 6.143917 0.0 0.0 0.511853 0.505031 0.519392 0.0 0.180108