Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00412 ATGGCGATGCTTGATTCCCTCTTCAACAAGGGCTTCAAAGCTTCCAAATGTAAAACGATGCTGAAATTGACGATTCCTCGCATTAAGCTGCTTAGGAACCGAAGAGAGATTCAGATAAGGCAGATGCGCCGGGACATTGCCAAGCTTCTCGAGACTGGTCAAGAAGCTACTGCGCGGATTCGGGTAGAGCATATCATTAGAGAAGAGAATATGATGGCTGCTCAAGAGATTCTTGAGCTGTTTTGCGAGCTCATTGCTGTCCGCCTTCCCATTATTGAATTGCAAAGAGAATGTCCCCTAGACTTGAAAGAAGCTATATCAAGTGTGTGTTGTGCTGCACCATCTGCTGTAACTGAGCTCACGCCAGATTGTGGTGTTAATCGTCAGTTAATCGAACTGCTATCTATTCGGGCTCCGTCAGCTGAGAAAAAATTGAATCTTTTGAAAGAAATTGCTGAAGAGCATAAAGTAGATTGGGATCCAGCTGCCTCCCAAACAGAGCTGTATAAATCTCATGAAGACTTACTTAGTTCCTTGATCTATGTTCTGTCTTTCGTCCCCTATATATTCAATATTTGTTGTCTGTTACAGTTTGTCAGCGGGTCGAAATTGCCACTTCCAAAAGAAAAACATGATGAAACATTGGTCTCTACCTCTGATGAAGCTCATGGGGAACAATCTGATCTTGATACAGATAGTGACATACTAGACCTACCTAATGTTCCTATGGAATCGGTATTACGGGTTTGGACTCCAGGTGTTGCCACTGCACCAGCAATTGTCCCACCATTGCCAGATGCCCCGGAGCTTGGAAACAAGGTATATACTCCTGAAAATTATGCGGAGCATACAAATAATTCTGTTGGTAAAGGGAAAGATAAACAATTTCTGCCATTCATTTCACCACCTTCGCCATCGTTCTATTCATCAAGTGAACATCCAACTGAACCACCAAGAACTGTTTTAAAGACTACAAGCGAGGTCGACGTGGATTTACAGGATGTGTTGGCTGCTGCTCAGAATGCTGCTGAGTCAGCTGAACGAGCAGCAGCTGCAGCTCGCGCGGCCGCCAGTCTTGCACAGATCAGAATTAGTGAGATCACAAATAGAAAAAATGAGCAAGTTCCAGAGAGTGGATGTGAGAACCCATTTCATACAGATAAGCCTCCGAACACAGGTCGAGTGATTAGTGTCGTGGTAGAACCTCCTCGAGACGAAAAAAGTACCCAAGAATCAGAGGATTTCAATGTCACTTCAGTAAAACAAATCAAATTGAAGGTCGACCATAATTCAACTCATCACACACCTCAAAGATCTCCTTATATGGAGGATGACACATATTTCTCATATCCAAACTTGTTCACGTCACAAAACTCGAGTCAGGAGTCTGGTTCTCATTCTCCCGGAGGAAACTCCCCGTAA 1422 43.81 MAMLDSLFNKGFKASKCKTMLKLTIPRIKLLRNRREIQIRQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELFCELIAVRLPIIELQRECPLDLKEAISSVCCAAPSAVTELTPDCGVNRQLIELLSIRAPSAEKKLNLLKEIAEEHKVDWDPAASQTELYKSHEDLLSSLIYVLSFVPYIFNICCLLQFVSGSKLPLPKEKHDETLVSTSDEAHGEQSDLDTDSDILDLPNVPMESVLRVWTPGVATAPAIVPPLPDAPELGNKVYTPENYAEHTNNSVGKGKDKQFLPFISPPSPSFYSSSEHPTEPPRTVLKTTSEVDVDLQDVLAAAQNAAESAERAAAAARAAASLAQIRISEITNRKNEQVPESGCENPFHTDKPPNTGRVISVVVEPPRDEKSTQESEDFNVTSVKQIKLKVDHNSTHHTPQRSPYMEDDTYFSYPNLFTSQNSSQESGSHSPGGNSP 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3559843 3562548 - Bda016377.1 Bda03g00412 3671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00412 473 MobiDBLite consensus disorder prediction 449 473 - -
Bda03g00412 473 MobiDBLite consensus disorder prediction 215 230 - -
Bda03g00412 473 PANTHER IST1 FAMILY MEMBER 1 114 IPR005061 GO:0015031
Bda03g00412 473 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 115 465 - -
Bda03g00412 473 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 1 114 - -
Bda03g00412 473 Coils Coil 32 59 - -
Bda03g00412 473 Pfam Regulator of Vps4 activity in the MVB pathway 18 120 IPR005061 GO:0015031
Bda03g00412 473 MobiDBLite consensus disorder prediction 425 473 - -
Bda03g00412 473 PANTHER IST1 FAMILY MEMBER 115 465 IPR005061 GO:0015031
Bda03g00412 473 Coils Coil 336 356 - -
Bda03g00412 473 MobiDBLite consensus disorder prediction 371 393 - -
Bda03g00412 473 Gene3D - 5 118 IPR042277 -
Bda03g00412 473 Gene3D - 119 169 IPR042277 -
Bda03g00412 473 MobiDBLite consensus disorder prediction 215 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00412 - - - mnt:21399460 451.825
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00412 Bda11g00852 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00412 Bda-Chr3:3559843 Bda04g00176 Bda-Chr4:5175950 6.20E-51 dispersed
Bda12g00635 Bda-Chr12:29693637 Bda03g00412 Bda-Chr3:3559843 3.47E-06 dispersed
Bda11g00852 Bda-Chr11:8390767 Bda03g00412 Bda-Chr3:3559843 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1309 Blo01g01750 Blo12g00768 . Bda03g00412 Bpe02g00192 Bpe04g00378 Bma04g00389 Bma01g02532 . . . . Car01g00848 . . Cpe06g00956 . . . . . . . . Cla08g00312 Cam08g0750 Cec08g0303 . Clacu08g0461 . . . . . Cone20ag0683 . . . . . . Bda11g00852 . . . . . . . Cmo09g01216 . . . Car09g01087 . . . . . . . . . . . . . . . . Lsi08g00258 . Chy03g00282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006306 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00412 Bda_Chr03 FPKM 3.952797 3.329364 13.487602 13.851936 22.848976 25.440434 22.070473 16.398497 17.068748