Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00414 ATGTGCCATCGTTGTGGTGCGGAGATGACCAAACATGAAGATTGGCAACTGGAGAATGGAAATTCTTCCAAAGTAGATGCTAGTGGCACCAAATTGTCTTGCAAATCTTGTGGAGAAGCTCCAGAGATAGAATTTTTGAAAAACAGTAGTATGAAATCTGTGCTAAGTCCAATGCCTTCATTGCCAAGCAGTGATTGCAGTAAGAATTATTTACTAGATATGCTGTTGCAGAAGCCAAGTGGAGACTATATACGAATTGGGAGTGAGAGATCAAATGCATTGACTGAAAGAGATAATGTGAATGATATGTACAAAGTAAGAGATACTGAAATTATGCAACCCAATAATGGTGATGAGGGCATTCATAAAAATTCTAGACATTCTGTAAATAATGAGACAGAGAGTTCTTCCCCTATTTGTGGTGTGATGGATGCTGCAATCTGGGAACCTCCTGGACCTGGAGACCTTGATGATGACTTGGAAGAAAACTTTACTAACGACAGTGATGAAGAAGCAAGTGTGGTTTGTAATCAAGACACCAATATTGAAGAATGCGGTAAGTCAGTTTCTTTGAGTTTTAAAGAAAGAAATGCGAGCTTTAAACTTAGAGAGGAGAGACTAAGAGCAATGGAGGAGGTTTATGACGGGCGGTTCAAGTCTATCGTTCATCAACTTTTTCAATCTTTTGGAGTTGATTCGTCGGCCAAAGATGGTGGAAATTGGGTGGACATTGTTGCGTCTTTGTCTTGGGAAGCTGCTTTGTTTTTGAAGCCTGACACCTCAGATGGAAAAACAATCGATCCTGACGGCTCCGTAAAAGTTAAATGTGTTGCCGTGGGATCGCGCGGCCAAAGTAAATTTATCAAGGGTCTAGTCTTCAAAAAGCACGCATCTCACAAGCACATGCCAACCAAATTTAAAAACCCGAAGTTGCTGTTGATCCAAGGAGTGCTAGGTCCGTCTTCAAGTGGGTTGCTATCGCTCAATACAATGGATCAGGAAAAGGATCATGAAAAGTCTATAATTGAGACGATTGAATTATGCCAACCTGATGTGATTTTAGTTGAAAAAACTGTCTCTCGTGGTATCCAAGAATCTATTCTTGGAAAAGGAAGAACATTAGTTCTTGAGATGAAGCTTCACCGGTTAGAGAGAATTGCTCGTTGTCTTGGTTCGCCTATCCTATCCTCTGATTCTATGATGAACCAAAAGCTAAAATATTGCGACACTCTTTACTTTGAAAAGTACGTAGAAGAACATGTCACTTTTGGTGAGGAGGGAAAGCGTGCAAGTAAGACATTATTGTTCATTGAGGGTTGTCCTACACGTCGAGGTGGTACGATTTTGCTGAAAGGATCGCACAGTGATGAATTGAAGAGGATTAAGTGTGTAGTTCGCTGTGCTGTGGTCATTGCCCATCATTTGATACTTGAGACCTCATTCCTTGTCGATCAGAGTGCTATGTTTACGACTATACCATTTGTGGGCTTGTTGGAATTTATGCCGCTTAACAAACAATTCCCTGATTTGGTTCGTAGTAGTTCTCAACTTGAGGAACCTGCTGATAATAGTCTTCAATCCACTGTTGATATTCCCATTTCCACCGAATTCCAAGGAGGTTCTGAAGAATCAAACTTGGAATTAGAAGGCGACTTGGCGATTTCTCATGAACCATATACTCCACTTATTTTTTCTGGCTTTTCCTCCATTTCAGAATCGCTGAAAAAGGTTATTGGAGATATCCCTTTTGCCTCGTCGTATTCATCGTTATCGTCTTATTTGGGATTCCATGGAGATCGACCTGATGGTCAGATCAACGAGACCATTTCCATTCCAATTGTGCCAGAGACAGATCATGGTTATAATGAAAGTAAAGGTACATTAGATGAAGAGAACTTAGTTGAAGATGTAAAACCCCAGTCTATACCAGCATTCTCTGAAAGCCCAGCTGAGGCGGAAAACGCACATGGGTATGTTGAAGAGCCTAGAAAGAGAGAAGATAATGTCCACCCCATATCAAACTCCCAGAGTATCTTAGTTCTGATGTCAAGTCGAAATGCCATGAGAGGAGTTGTATGTGAACAAAGCCATTTTTCTCACATCATGTTCTACAAGAATTTTGATGTTCCGCTAGGAAAGTTTCTACGGGAAAATTTATTAAATCAGAATACCAAGTGCAATACATGTGGTGAACTGCCGGGAGCTCACTTTTACTACTATGCCCATAACAACAAGCAGCTAACAATCCAAGTCCGACAGATTCCGGGAGGTAAATTCTTGCCTGGGAAAAAGGAAGGGAAACTTTGGATGTGGAGTCGATGTGGTTATTGTAAATCAGAAAAAGGGACATCAAATTATAGCAAAAGGGTGTTAATTTCACCCGATGCACGATGTTTATCATTCGGGAAGTTCCTTGAGCTCAGTTTCTTTCACTATTCTTCATCCAGTAAATTGTCCAGCTGTGGCCATTCATTGTACAGAGACTTCCTTCACTTCTTTGGATTTGGCCCCATGGTTGCTATGTTCAAATATTCTCAGGTTCCAACTTATACAGTGTCTGTTCCTCCTCAGAAGCTGGAGTACGGCAAGTTAGTCGGACAAGAGAGGGTTATCAAAGCAACTCAAAATGTGTACATGAAAGGGATGCAACTGTTCGGGGAGATTGCAAACACTTTGAAAAAGATCAGATCTCAACTTAAAAGCACAACTTTGAATCTTCAAGGCTCACTTAAAGACTTCTCTGTTGTTGAAGAGATGCTAAAGAGGGATAAATTTGAATTTGAGGTGAACATTCATAATACTCTTACTGATGATGGGAATGCTGACCCTGTTTACAAGTTTCTCCTTATTAATCGCCTTCTCTGGGAGCTTTTGCTGGAATCGTGTATATGGGATCGTCGCCTTTATTCGCTACTTTCTCCTAATTCACCTATTTACTGTGAAGTGGCTGAAAAAGTTATGCCTGAACCAATTAGAGTAACTGAAGGGACAGAACAATACGATGAAATAGGAAGTCATGATAGTCCCCAATCAGCAATTCAGACAGAGAATTCATTAGGATCAAATGAATTTTTGGTGAAAGAAAACAAAGTTGAAGTAGTTGTTCCAATATATACGAATTCCTCGCCAGATAATTCAAGCCAGAAGAATTATGATATTATGTTCGAACAAGTCCCGAGTTCCAAATGTGATTATTCCAATGTATATGCGTCGAAAGAAGGGGCGTCTTTGAATAAATCCTCCTCCAAATTAGGAGTTTCAAAGGATTGGTACTGGACACCATTTTCTGAGATTCGACAGGTACACATGAAGGACATTACGAAAAGTTATATACCGAAATTTGAAGTCGTGAGTAGCGATACGGCAAAATATTTACCCTCAGCACACCAACTAATAATGCAAGAAGGATCGAGGCTTCACATTCCTCTTGGAACTGACGATCATATTGTGTCAGATTATGAAGGAGAACTCTCAAGCATTGTTGCCTGTGTTCTGGCGACGTTGAACGAACTGCCTGTCCAAACAGAAATCCCAGATCAGGAGAAGGTAGAGCTTCGAGTGTCTGCTAAATCGTTTGATAATTTACGCAGCCTGAATCGATTTCCTTCAAGTGGATCTTCAGACTCTGATTCCGTACATTCTACTGAAGGATTAAGATTTTTCAGTTTTGATGGGTTGAATCTGCTAGATTCTATTGTTCCAGAGACTTTTCGACCAGCAGAACCTGAAGGCGTTGTACGATCACTTGCAAAGGGAAAGTATATCGTAAATTGCCCATATTTCATGCAGTTTCTTGATCTTCGGAGCCGATGCTTACCTTCTGAGTTACATTACATTGCTTCTCTGAGCCGTTGTAGAGACTGGGAAGCCCAAGGCGGAAAAAGCAAATCTTTTTTCGCTAAAACACTTGATGATAGGTTTATAATAAAGGAAATTAAAAAGACAGAATATGATTCCTTCATGAAGATCGCGCCTGATTATTTCGAGTACATGAATCAATCGTTTGAATTGGGAAATCAAACTTGCCTAGCTAAAGTTCTCGGGATTTATCAGGTAATGGTTAGACAGACAAAAAGCGGAAAGGAGACAAGGCATGATCTAATGGTGATGGAGAATCTGACATTTGGTCGGAAAATTTCTCGTCAATATGATCTTAAAGGAGCCCTTCATGCTCGATACAATTCAGTCGCCAGCGACGTGCTTTTAGATCAGAATTTCGTCAACGACATGAATACATCCCCGTTGTATGTTAGTAACCAAGCAAAGCGAATCTTGCAAAGGGCTGTTTGGAATGACACAACTTTCCTCAATTCGATAAATGTAATGGACTATTCTTTACTTGTCGGAGTTGATTCCGAAAGGCGAGAACTTGTCTGTGGAATCATTGATTACCTAAGGCAATATACATGGGATAAGCATCTAGAGACATGGGTAAAATCTTCGCTTGTTCCTAGGAATATCTTGCCGACGGTAATATCTCCCAAAGAATACAAGAGGAGATTCAGAAAGTTCATGTCGACGAATTTCTTTAGTGTCCCGGATCGTTGGTGCATGCAGAGGAGCGAGTTTGACGACCCTTGTGAACTATGTGGTGTGGGAGAAGATGAAGTCCCGAATTGA 4620 40.61 MCHRCGAEMTKHEDWQLENGNSSKVDASGTKLSCKSCGEAPEIEFLKNSSMKSVLSPMPSLPSSDCSKNYLLDMLLQKPSGDYIRIGSERSNALTERDNVNDMYKVRDTEIMQPNNGDEGIHKNSRHSVNNETESSSPICGVMDAAIWEPPGPGDLDDDLEENFTNDSDEEASVVCNQDTNIEECGKSVSLSFKERNASFKLREERLRAMEEVYDGRFKSIVHQLFQSFGVDSSAKDGGNWVDIVASLSWEAALFLKPDTSDGKTIDPDGSVKVKCVAVGSRGQSKFIKGLVFKKHASHKHMPTKFKNPKLLLIQGVLGPSSSGLLSLNTMDQEKDHEKSIIETIELCQPDVILVEKTVSRGIQESILGKGRTLVLEMKLHRLERIARCLGSPILSSDSMMNQKLKYCDTLYFEKYVEEHVTFGEEGKRASKTLLFIEGCPTRRGGTILLKGSHSDELKRIKCVVRCAVVIAHHLILETSFLVDQSAMFTTIPFVGLLEFMPLNKQFPDLVRSSSQLEEPADNSLQSTVDIPISTEFQGGSEESNLELEGDLAISHEPYTPLIFSGFSSISESLKKVIGDIPFASSYSSLSSYLGFHGDRPDGQINETISIPIVPETDHGYNESKGTLDEENLVEDVKPQSIPAFSESPAEAENAHGYVEEPRKREDNVHPISNSQSILVLMSSRNAMRGVVCEQSHFSHIMFYKNFDVPLGKFLRENLLNQNTKCNTCGELPGAHFYYYAHNNKQLTIQVRQIPGGKFLPGKKEGKLWMWSRCGYCKSEKGTSNYSKRVLISPDARCLSFGKFLELSFFHYSSSSKLSSCGHSLYRDFLHFFGFGPMVAMFKYSQVPTYTVSVPPQKLEYGKLVGQERVIKATQNVYMKGMQLFGEIANTLKKIRSQLKSTTLNLQGSLKDFSVVEEMLKRDKFEFEVNIHNTLTDDGNADPVYKFLLINRLLWELLLESCIWDRRLYSLLSPNSPIYCEVAEKVMPEPIRVTEGTEQYDEIGSHDSPQSAIQTENSLGSNEFLVKENKVEVVVPIYTNSSPDNSSQKNYDIMFEQVPSSKCDYSNVYASKEGASLNKSSSKLGVSKDWYWTPFSEIRQVHMKDITKSYIPKFEVVSSDTAKYLPSAHQLIMQEGSRLHIPLGTDDHIVSDYEGELSSIVACVLATLNELPVQTEIPDQEKVELRVSAKSFDNLRSLNRFPSSGSSDSDSVHSTEGLRFFSFDGLNLLDSIVPETFRPAEPEGVVRSLAKGKYIVNCPYFMQFLDLRSRCLPSELHYIASLSRCRDWEAQGGKSKSFFAKTLDDRFIIKEIKKTEYDSFMKIAPDYFEYMNQSFELGNQTCLAKVLGIYQVMVRQTKSGKETRHDLMVMENLTFGRKISRQYDLKGALHARYNSVASDVLLDQNFVNDMNTSPLYVSNQAKRILQRAVWNDTTFLNSINVMDYSLLVGVDSERRELVCGIIDYLRQYTWDKHLETWVKSSLVPRNILPTVISPKEYKRRFRKFMSTNFFSVPDRWCMQRSEFDDPCELCGVGEDEVPN 1539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3605484 3612561 + Bda016379.1 Bda03g00414 3673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00414 1539 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 135 1529 - -
Bda03g00414 1539 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1190 1509 IPR002498 GO:0016307|GO:0046488
Bda03g00414 1539 Gene3D GroEL 283 452 IPR027409 -
Bda03g00414 1539 CDD PIPKc_PIKfyve 1260 1509 IPR044769 GO:0000285
Bda03g00414 1539 Pfam TCP-1/cpn60 chaperonin family 238 481 IPR002423 GO:0005524
Bda03g00414 1539 SUPERFAMILY SAICAR synthase-like 1253 1509 - -
Bda03g00414 1539 MobiDBLite consensus disorder prediction 112 136 - -
Bda03g00414 1539 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1291 1454 IPR002498 GO:0016307|GO:0046488
Bda03g00414 1539 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1457 1506 IPR002498 GO:0016307|GO:0046488
Bda03g00414 1539 MobiDBLite consensus disorder prediction 643 670 - -
Bda03g00414 1539 SMART PIPK_2 1226 1510 IPR002498 GO:0016307|GO:0046488
Bda03g00414 1539 PANTHER 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE FAB1D-RELATED 135 1529 - -
Bda03g00414 1539 SUPERFAMILY GroEL apical domain-like 284 452 IPR027409 -
Bda03g00414 1539 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1235 1372 IPR027484 -
Bda03g00414 1539 CDD Fab1_TCP 219 485 - -
Bda03g00414 1539 Gene3D - 1374 1510 - -
Bda03g00414 1539 MobiDBLite consensus disorder prediction 654 670 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00414 K00921 PIKFYVE, FAB1; 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150] - cit:102608890 1533.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00414 Bda11g00850 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00414 Bda-Chr3:3605484 Bda10g01191 Bda-Chr10:45893811 1.33E-98 dispersed
Bda05g00624 Bda-Chr5:54296672 Bda03g00414 Bda-Chr3:3605484 2.89E-63 transposed
Bda11g00850 Bda-Chr11:8361776 Bda03g00414 Bda-Chr3:3605484 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1304 Blo01g01752 . . Bda03g00414 Bpe02g00190 Bpe04g00380 Bma04g00391 Bma01g02535 . . . Cma09g01172 . . . Cpe06g00918 . . . . . . . . . . . . . . . . . . Cone20ag0680 . . . . . . Bda11g00850 . . . . . . . Cmo09g01170 . . . Car09g01046 . . Bhi09g01620 . . . . . . Cla09g00997 Cam09g1055 Cec09g1057 Cco09g1071 . . Cre09g1019 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004019 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 0 0 7 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00414 Bda_Chr03 FPKM 3.185897 6.592291 0.121409 0.0 0.0 0.0 0.0 1.066297 1.108145