Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00417 ATGACCACCCGCGAGGCACCTGTCTCGATCTCCATCTCCTCCACTTCTAATCTTACAGGGTTTGTTCTCGCTGTGGTTTCTAGTGCTTTTATTGGGTCCAGTTTTATAATTAAGAAGTTGGGTCTTCAAGTAGCCGGCGCATCGGGTGTTCGAGCCAATTCTGGAGGATATGGGTATCTATTGCAGCCTCTTTGGTGGCTTGGAATGGTGACCATGATTGTTGGGGAGCTTGCTAATTTTGTGGCTTACATCTACGCTCCTGCTGTTCTTGTCACTCCCCTGGGAGCACTGAGTATAATTGTGAGTGTCTGTTTCTTCTCCAGTGCTGTTCTAGCTCATTTTTTCTTGAAGGAACAACTGAAGAAAATGGGTATACTGGGGTGTCTTTTGTGTGTGGTTGGATCGACTGTGATTGTCCTCCATTCACCCGCTGAACTAACTCTAACTTCCGTGGACGAGATCTGGGACCTTGCCACTCAACCAGCATTTCTTTTGTACACAGCCTCAGCTGTCATTTTAGCATTGTTCTTGGTGTTATATTGTGAACCACGCTTTGGGCAGACGAACATTATTGTCTACATCGGCATTTGTTCAGTTATTGGATCTTTGACGGTAATGAGCATTAAGGCAATTGGCATTGCAATAAAACTCACCGTGGAAGGTTTGGACCAAGCAGGACATTTTCAAACCTGGGTTTTAGCTTTGATTGCAATCTCATGTATAATCATTCAGCTAAACTATTTGAACAAGGCCCTGGATACATTCAACACAGCCGTTGTTTCTCCAATATATTACGCGCTATTTACGACATTCACGATTTTGGCCAGTGCTATAATGTTCAAGGATTGGTCTGGTCAGAGTGCTAGCAGTATTGTCTCAGTGATTTGTGGATTTATAACAATTCTTTCCGGGACGACGGTATTGCACAGCACAAGGGCACCTGATCAAGCTTCTATTTCGGATTTCTATGGACCCTTTTCTCCTCAAGTGTCCTGGTTTATCCATCCAAATGGTGATGCATGGAAGCCGATAGATCGGGAGAAACTCTTACCAGATTTTGATGCCATTCTTAAACAAGACCATTTCTCATAA 1092 43.86 MTTREAPVSISISSTSNLTGFVLAVVSSAFIGSSFIIKKLGLQVAGASGVRANSGGYGYLLQPLWWLGMVTMIVGELANFVAYIYAPAVLVTPLGALSIIVSVCFFSSAVLAHFFLKEQLKKMGILGCLLCVVGSTVIVLHSPAELTLTSVDEIWDLATQPAFLLYTASAVILALFLVLYCEPRFGQTNIIVYIGICSVIGSLTVMSIKAIGIAIKLTVEGLDQAGHFQTWVLALIAISCIIIQLNYLNKALDTFNTAVVSPIYYALFTTFTILASAIMFKDWSGQSASSIVSVICGFITILSGTTVLHSTRAPDQASISDFYGPFSPQVSWFIHPNGDAWKPIDREKLLPDFDAILKQDHFS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3617756 3620443 - Bda016382.1 Bda03g00417 3676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00417 363 PANTHER MAGNESIUM TRANSPORTER-RELATED 15 362 - -
Bda03g00417 363 PANTHER UNCHARACTERIZED 15 362 IPR008521 GO:0015095|GO:0015693|GO:0016021
Bda03g00417 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 61 143 - -
Bda03g00417 363 Pfam Magnesium transporter NIPA 16 312 IPR008521 GO:0015095|GO:0015693|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00417 K22733 NIPA, SLC57A2S; magnesium transporter - jre:108982538 544.658
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00417 Bda11g00847 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00417 Bda-Chr3:3617756 Bda09g00325 Bda-Chr9:4114747 1.09E-138 dispersed
Bda14g00604 Bda-Chr14:4557673 Bda03g00417 Bda-Chr3:3617756 3.58E-145 transposed
Bda11g00847 Bda-Chr11:8350731 Bda03g00417 Bda-Chr3:3617756 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1289 Blo01g01754 Blo12g00765 . Bda03g00417 Bpe02g00188 . . Bma01g02537 . . Cma01g00941 . . . . Cpe06g00921 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00847 . . . . . . Cmo01g00981 . . . . . . . Bhi09g01565 Tan01g2974 . . . . . Cla09g00961 Cam09g1013 Cec09g1016 Cco09g1028 . . Cre09g0976 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000928 3 9 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 2 2 2 2 2 2 6 7 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00417 Bda_Chr03 FPKM 7.908291 8.797482 17.206018 16.677189 9.194599 7.827201 8.640265 36.708652 33.395367