Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00425 ATGGTGAATTCTATGGTAGAACGCGCCACTAGTGATATGCTGATTGGTCCTGATTGGGCCACGAATATAGAGATCTGTGACATGCTCAATAACGACCCCGGGCAAACAAAAGATGTTATTAAAGGTATAAAGAAGCGCCTTAAAAGTAAGAACACCAAAGTACAACTTCTTACTTTGACGCTATTGGAGACAATCGTTAAGAACTGTGGCGACATCGTACATGTGCATGTGGCAGAGAAGGATGTTCTGCACGAGATGCTAAAAATAGTAAAGAAGAAGCCTGACTTTCATGTCAAAGAGAAGATATTGATTCTGATTGATACCTGGCAAGAAGCTTTTGGAGGACCAAGGGCAAGATATCCCCAATACTATGCTGCATACCAGGAATTATTGCGCGCTGGGGCAGTTTTTCCTCAGAGAATGGAGAGGTCTGGCCCTGTACTTACACCACCGCAGACACAACCCTTGACATCATATCCTCAAAATCTGCGTAATCCTGATTATCATTCCAATAGACCTGGATTTTCTGCTGAGTCTGAATTTCCAACTTTAAGGTTGACTCATTGCTAG 570 42.81 MVNSMVERATSDMLIGPDWATNIEICDMLNNDPGQTKDVIKGIKKRLKSKNTKVQLLTLTLLETIVKNCGDIVHVHVAEKDVLHEMLKIVKKKPDFHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRMERSGPVLTPPQTQPLTSYPQNLRNPDYHSNRPGFSAESEFPTLRLTHC 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3671051 3672864 + Bda016391.2 Bda03g00425 3684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00425 189 Gene3D - 1 138 IPR008942 -
Bda03g00425 189 PANTHER TARGET OF MYB PROTEIN 1 1 188 - -
Bda03g00425 189 CDD VHS 2 132 - -
Bda03g00425 189 MobiDBLite consensus disorder prediction 146 169 - -
Bda03g00425 189 Pfam VHS domain 3 130 IPR002014 GO:0035091|GO:0043130
Bda03g00425 189 PANTHER TOM1-LIKE PROTEIN 1 188 IPR044836 GO:0035091|GO:0043130|GO:0043328
Bda03g00425 189 MobiDBLite consensus disorder prediction 144 176 - -
Bda03g00425 189 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Bda03g00425 189 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Bda03g00425 189 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00944 Bda03g00425 CCT
Bda01g00727 Bda03g00425 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00944 Bda-Chr1:42879492 Bda03g00425 Bda-Chr3:3671051 4.30E-15 dispersed
Bda03g00425 Bda-Chr3:3671051 Bda03g01437 Bda-Chr3:51790590 1.87E-52 dispersed
Bda11g00835 Bda-Chr11:8250639 Bda03g00425 Bda-Chr3:3671051 1.09E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00425 - - vvi:100249280 306.605