Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda03g00430 | ATGACAATGAGTACGGAAGAGACTGGGAGTAGCTTATACTCATTATCCTCTCCGTCTTCGACAGCTCAATCACTTCAACACCCACTGTCCATTTCCTCGAGCTCAGACCCTAAAAAGACAAAGCGAATACGAGACTCGAGCAAACACCCGATCTATAGAGGAGTTCGAATGAGAAATTGGGGTAAATGGGTTTCGGAGATTCGCGAACCTCGAAAGAAATCTCGTATTTGGCTTGGAACCTTCCCTACCCCTGAAATGGCTGCAAGAGCACACGACGTCGCCGCTTTGAGCATCAAAGGTAGCTCCGCCATTCTTAACTTCCCAGAACTCGCCGACTCCCTTCCTCGACCGGTCTCCATCGCTCGCCGGGACGTTCAAGCGGCAGCGGCGAAGGCCGCTCAGATGGAGATATTCGACTCTCCGCAGTCAATGTCATCTTCTTCTTCGCTGTCGTCGCTCGTGTCTATGATGGATTTGTCGTCCCGTCCAGCAACGAATGAATCAGAGGAGCTGAGCGAGATCCTGGAATTGCCTAGTCTGGGGAATGCATATGATTCGTACGAGTTGACCAGGGAGTTTGAGTTTTTTGACTCGGCGGATTGCTGGGCTTATCCACCGCCATGGTTGCAGAGCATAGAGGATTGTGGATACAACAATAAAGCAAGGGACGAGGTGGGGATCGGAGAGAGTAGCGAGTACGTTTTGTGGGATTACTGA | 717 | 50.91 | MTMSTEETGSSLYSLSSPSSTAQSLQHPLSISSSSDPKKTKRIRDSSKHPIYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSSAILNFPELADSLPRPVSIARRDVQAAAAKAAQMEIFDSPQSMSSSSSLSSLVSMMDLSSRPATNESEELSEILELPSLGNAYDSYELTREFEFFDSADCWAYPPPWLQSIEDCGYNNKARDEVGIGESSEYVLWDY | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3710423 | 3711139 | - | Bda016396.1 | Bda03g00430 | 3689 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda03g00430 | 238 | Gene3D | AP2/ERF domain | 51 | 109 | IPR036955 | GO:0003700|GO:0006355 | |
Bda03g00430 | 238 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 16 | 221 | - | - | |
Bda03g00430 | 238 | PRINTS | Ethylene responsive element binding protein signature | 52 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Bda03g00430 | 238 | PRINTS | Ethylene responsive element binding protein signature | 74 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Bda03g00430 | 238 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 16 | 221 | - | - | |
Bda03g00430 | 238 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Bda03g00430 | 238 | ProSiteProfiles | AP2/ERF domain profile. | 51 | 108 | IPR001471 | GO:0003700|GO:0006355 | |
Bda03g00430 | 238 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Bda03g00430 | 238 | SUPERFAMILY | DNA-binding domain | 51 | 109 | IPR016177 | GO:0003677 | |
Bda03g00430 | 238 | SMART | rav1_2 | 51 | 114 | IPR001471 | GO:0003700|GO:0006355 | |
Bda03g00430 | 238 | Pfam | AP2 domain | 50 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Bda03g00430 | 238 | CDD | AP2 | 50 | 110 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00937 | Bda-Chr1:42745157 | Bda03g00430 | Bda-Chr3:3710423 | 7.76E-71 | dispersed | |
Bda03g00430 | Bda-Chr3:3710423 | Bda02g00418 | Bda-Chr2:44826486 | 1.15E-59 | dispersed | |
Bda11g00829 | Bda-Chr11:8213516 | Bda03g00430 | Bda-Chr3:3710423 | 6.80E-102 | wgd | |
Bda13g01332 | Bda-Chr13:35584239 | Bda03g00430 | Bda-Chr3:3710423 | 2.29E-78 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15652 | PF00847 | AP2 | 7.00E-14 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda03g00430 | K09286 | - | tcc:18587975 | 260.766 |