Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00430 ATGACAATGAGTACGGAAGAGACTGGGAGTAGCTTATACTCATTATCCTCTCCGTCTTCGACAGCTCAATCACTTCAACACCCACTGTCCATTTCCTCGAGCTCAGACCCTAAAAAGACAAAGCGAATACGAGACTCGAGCAAACACCCGATCTATAGAGGAGTTCGAATGAGAAATTGGGGTAAATGGGTTTCGGAGATTCGCGAACCTCGAAAGAAATCTCGTATTTGGCTTGGAACCTTCCCTACCCCTGAAATGGCTGCAAGAGCACACGACGTCGCCGCTTTGAGCATCAAAGGTAGCTCCGCCATTCTTAACTTCCCAGAACTCGCCGACTCCCTTCCTCGACCGGTCTCCATCGCTCGCCGGGACGTTCAAGCGGCAGCGGCGAAGGCCGCTCAGATGGAGATATTCGACTCTCCGCAGTCAATGTCATCTTCTTCTTCGCTGTCGTCGCTCGTGTCTATGATGGATTTGTCGTCCCGTCCAGCAACGAATGAATCAGAGGAGCTGAGCGAGATCCTGGAATTGCCTAGTCTGGGGAATGCATATGATTCGTACGAGTTGACCAGGGAGTTTGAGTTTTTTGACTCGGCGGATTGCTGGGCTTATCCACCGCCATGGTTGCAGAGCATAGAGGATTGTGGATACAACAATAAAGCAAGGGACGAGGTGGGGATCGGAGAGAGTAGCGAGTACGTTTTGTGGGATTACTGA 717 50.91 MTMSTEETGSSLYSLSSPSSTAQSLQHPLSISSSSDPKKTKRIRDSSKHPIYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSSAILNFPELADSLPRPVSIARRDVQAAAAKAAQMEIFDSPQSMSSSSSLSSLVSMMDLSSRPATNESEELSEILELPSLGNAYDSYELTREFEFFDSADCWAYPPPWLQSIEDCGYNNKARDEVGIGESSEYVLWDY 238
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 3710423 3711139 - Bda016396.1 Bda03g00430 3689
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00430 238 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Bda03g00430 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 221 - -
Bda03g00430 238 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Bda03g00430 238 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Bda03g00430 238 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 16 221 - -
Bda03g00430 238 MobiDBLite consensus disorder prediction 1 36 - -
Bda03g00430 238 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Bda03g00430 238 MobiDBLite consensus disorder prediction 1 48 - -
Bda03g00430 238 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677
Bda03g00430 238 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Bda03g00430 238 Pfam AP2 domain 50 100 IPR001471 GO:0003700|GO:0006355
Bda03g00430 238 CDD AP2 50 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00937 Bda-Chr1:42745157 Bda03g00430 Bda-Chr3:3710423 7.76E-71 dispersed
Bda03g00430 Bda-Chr3:3710423 Bda02g00418 Bda-Chr2:44826486 1.15E-59 dispersed
Bda11g00829 Bda-Chr11:8213516 Bda03g00430 Bda-Chr3:3710423 6.80E-102 wgd
Bda13g01332 Bda-Chr13:35584239 Bda03g00430 Bda-Chr3:3710423 2.29E-78 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15652 PF00847 AP2 7.00E-14 CL0081 Bda TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00430 K09286 - tcc:18587975 260.766