Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00433 ATGGAAGCTCCAGAGTATTTCCAGACCCATTTTTGCTCACTCTTGGTGACCGAAAGAAGCCGGACTTCAGACACAAAGACCGCCGGAGCTATTGACAATTTTACAGTCGATGAACTCCTTGACTTCTCCAATGATGACCTCGCATTGGCCGATAGTAATGGCTCTCTTGATTACCTCAATGCCAGCTCCACTGACTCATCCACCCTCACCTTCGTCGACCGCTCCAATTCTTCTTCGTTTTCAGGCTGTGAACCACCGGTTCTCCCTAGTGATTTTTCGGCTGACGTTCAGTTCTCTAGCGACCTCTGTCTTCCGTACGACGATTTGGCCGAGCTCCAATGGCTTTCAAATGTCACGGAGGAATCGTTCTCCAGCGAGGATTTGCAGAAACTTCAGCTGATATCAGGCATGAAAGCCACCCCAACAGAGGATTCTGGCGGAAACTCCGCAGCATTCCAACCAGAAATGTCCGTTCCGGCAAAGGCGCGTAGCAAGCGGTCGCGTGGCGCACCACGCATATGGACTTCCCGCCTCCCCTTACTTTCTCCGACGTCTTCATCCTCGGAAACGGACGTTATTGCTGCTCTTCCAGCGAATTCCGCTAAAAAAGCATCCTTATATGTAAAGTCACATCGAGATGCAAGAACCGGGCGAAAGTGCCTGCATTGCGCCACGGATCAAACGCCGCAGTGGCGAACAGGACCAATGGGTCCGAAGACTCTCTGCAACGCTTGCGGCGTGAGGTTCAAATCCGGAAGACTGGTGCCTGAGTACCGACCAGCAGCTAGCCCGACTTTTGTGCTAACAAAGCACTCGAATTCTCATCGGAAAGTGATGGAGCTCCGTCGTCAGAAAGAGATGATGGGGGCCCACCAAAATCAGAGCTTTCAGGGCGAGAACATGCTCCTCGATGCATCCGCCGGTGGAAGTACTTGA 936 52.35 MEAPEYFQTHFCSLLVTERSRTSDTKTAGAIDNFTVDELLDFSNDDLALADSNGSLDYLNASSTDSSTLTFVDRSNSSSFSGCEPPVLPSDFSADVQFSSDLCLPYDDLAELQWLSNVTEESFSSEDLQKLQLISGMKATPTEDSGGNSAAFQPEMSVPAKARSKRSRGAPRIWTSRLPLLSPTSSSSETDVIAALPANSAKKASLYVKSHRDARTGRKCLHCATDQTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMGAHQNQSFQGENMLLDASAGGST 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3736013 3737084 - Bda016400.1 Bda03g00433 3692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00433 311 MobiDBLite consensus disorder prediction 142 169 - -
Bda03g00433 311 PIRSF Txn_fac_GATA_plant 15 309 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bda03g00433 311 ProSiteProfiles GATA-type zinc finger domain profile. 214 250 IPR000679 GO:0006355|GO:0043565
Bda03g00433 311 CDD ZnF_GATA 219 266 IPR000679 GO:0006355|GO:0043565
Bda03g00433 311 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Bda03g00433 311 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 278 - -
Bda03g00433 311 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Bda03g00433 311 Gene3D - 210 288 IPR013088 GO:0006355|GO:0008270
Bda03g00433 311 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355|GO:0043565
Bda03g00433 311 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Bda03g00433 311 SMART GATA_3 214 264 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00433 - - - zju:107420464 357.836
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00433 Bda-Chr3:3736013 Bda09g00212 Bda-Chr9:2996227 9.27E-112 dispersed
Bda08g00019 Bda-Chr8:179909 Bda03g00433 Bda-Chr3:3736013 4.81E-38 dispersed
Bda03g00433 Bda-Chr3:3736013 Bda10g00830 Bda-Chr10:42690265 1.18E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda03g00433 . 75 291 C2C2-Gata Transcription Factor Family AT5G25830 51.4 4.8e-58 221.9
Bda09g00660 . 76 275 C2C2-Gata Transcription Factor Family AT5G25830 51.1 4.0e-49 192.2
Bda09g00212 . 74 275 C2C2-Gata Transcription Factor Family AT5G25830 51.1 9.0e-49 191.0
Bda03g01053 BCT 1 240 C2C2-Gata Transcription Factor Family AT3G60530 51.4 3.7e-52 201.8
Bda04g00030 CCT,ECH 38 205 C2C2-Gata Transcription Factor Family AT5G66320 58.2 5.8e-43 171.8
Bda14g00992 . 2 173 C2C2-Gata Transcription Factor Family AT5G66320 55.7 4.1e-41 165.6
Bda14g00992 . 8 173 C2C2-Gata Transcription Factor Family AT3G51080 60.5 2.9e-41 166.0
Bda04g00030 CCT,ECH 38 185 C2C2-Gata Transcription Factor Family AT3G51080 63.9 7.2e-40 161.4
Bda06g00001 . 1 328 C2C2-Gata Transcription Factor Family AT4G17570 57.2 3.9e-91 332.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15653 PF00320 GATA 3.70E-15 CL0167 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00433 Bda_Chr03 FPKM 0.233048 0.408713 0.243574 0.305987 2.883658 3.49824 2.919322 0.387659 0.493344