Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00433 ATGGAAGCTCCAGAGTATTTCCAGACCCATTTTTGCTCACTCTTGGTGACCGAAAGAAGCCGGACTTCAGACACAAAGACCGCCGGAGCTATTGACAATTTTACAGTCGATGAACTCCTTGACTTCTCCAATGATGACCTCGCATTGGCCGATAGTAATGGCTCTCTTGATTACCTCAATGCCAGCTCCACTGACTCATCCACCCTCACCTTCGTCGACCGCTCCAATTCTTCTTCGTTTTCAGGCTGTGAACCACCGGTTCTCCCTAGTGATTTTTCGGCTGACGTTCAGTTCTCTAGCGACCTCTGTCTTCCGTACGACGATTTGGCCGAGCTCCAATGGCTTTCAAATGTCACGGAGGAATCGTTCTCCAGCGAGGATTTGCAGAAACTTCAGCTGATATCAGGCATGAAAGCCACCCCAACAGAGGATTCTGGCGGAAACTCCGCAGCATTCCAACCAGAAATGTCCGTTCCGGCAAAGGCGCGTAGCAAGCGGTCGCGTGGCGCACCACGCATATGGACTTCCCGCCTCCCCTTACTTTCTCCGACGTCTTCATCCTCGGAAACGGACGTTATTGCTGCTCTTCCAGCGAATTCCGCTAAAAAAGCATCCTTATATGTAAAGTCACATCGAGATGCAAGAACCGGGCGAAAGTGCCTGCATTGCGCCACGGATCAAACGCCGCAGTGGCGAACAGGACCAATGGGTCCGAAGACTCTCTGCAACGCTTGCGGCGTGAGGTTCAAATCCGGAAGACTGGTGCCTGAGTACCGACCAGCAGCTAGCCCGACTTTTGTGCTAACAAAGCACTCGAATTCTCATCGGAAAGTGATGGAGCTCCGTCGTCAGAAAGAGATGATGGGGGCCCACCAAAATCAGAGCTTTCAGGGCGAGAACATGCTCCTCGATGCATCCGCCGGTGGAAGTACTTGA 936 52.35 MEAPEYFQTHFCSLLVTERSRTSDTKTAGAIDNFTVDELLDFSNDDLALADSNGSLDYLNASSTDSSTLTFVDRSNSSSFSGCEPPVLPSDFSADVQFSSDLCLPYDDLAELQWLSNVTEESFSSEDLQKLQLISGMKATPTEDSGGNSAAFQPEMSVPAKARSKRSRGAPRIWTSRLPLLSPTSSSSETDVIAALPANSAKKASLYVKSHRDARTGRKCLHCATDQTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMGAHQNQSFQGENMLLDASAGGST 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3736013 3737084 - Bda016400.1 Bda03g00433 3692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00433 311 MobiDBLite consensus disorder prediction 142 169 - -
Bda03g00433 311 PIRSF Txn_fac_GATA_plant 15 309 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bda03g00433 311 ProSiteProfiles GATA-type zinc finger domain profile. 214 250 IPR000679 GO:0006355|GO:0043565
Bda03g00433 311 CDD ZnF_GATA 219 266 IPR000679 GO:0006355|GO:0043565
Bda03g00433 311 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Bda03g00433 311 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 278 - -
Bda03g00433 311 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Bda03g00433 311 Gene3D - 210 288 IPR013088 GO:0006355|GO:0008270
Bda03g00433 311 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355|GO:0043565
Bda03g00433 311 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Bda03g00433 311 SMART GATA_3 214 264 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00433 Bda-Chr3:3736013 Bda09g00212 Bda-Chr9:2996227 9.27E-112 dispersed
Bda08g00019 Bda-Chr8:179909 Bda03g00433 Bda-Chr3:3736013 4.81E-38 dispersed
Bda03g00433 Bda-Chr3:3736013 Bda10g00830 Bda-Chr10:42690265 1.18E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15653 PF00320 GATA 3.70E-15 CL0167 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00433 - - zju:107420464 357.836