Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00434 ATGCTGGTATTGAGAAAATTTGGTTATATTACACTCAGCCGGAGTTACTCTGTTAATTTGCAGTGGGAAGTAATGGCGGTGACTTCTTCGTGTAAGGACGCAAATAAGATAGCGATGGATAACGGGAAGTACGTAAGGTACACACCTGAACAAGTGGAAGCCCTAGAGAGGCTTTATTACGAATGCCCCAAACCCAGTTCCATTCGCCGCCAACAGCTCATCAAAGAATGCCCCATTCTGTCCAACATAGAGCCCAAGCAGATCAAAGTTTGGTTCCAAAACAGAAGGTGTAGAGAGAAGCAGCGGAAAGAATCGTCGCGACTGCAAGCAGTGAACAGGAAGCTAACAGCCATGAACAGGCTACTAATGGAGGAAAACGATCGTTTGCAGAAACAAGTATCGCAGCTGGTGTACGACAACACCTATTTTCGCCAGGAAACTCAAAATGCTGCTTTAGCCTCCGCAGACACAAGCTGTGATTCAGTGGTGACGAGTGGTCAACACCATCAAACTCCTCAGCATCCATTGAAGGATGCCAGCCCTGCAGGACTTTTGTCCATTGCCGAGGAGACTTTAACAGAGTTTATCTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAATTGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTAATAGTTCTGCTGGAGTGGCAGCACGTGCATGTGCCCTTGTCGGTTTGGAACCGACTAGGGTCGCTGAAATCCTCAAAGATCGGCCTTCGTGGTTACGAGATTGCCGAGCTGTGGATGTTCTAAACATGCTGTCCACAGGAAATGGTGGAACCATTGAACTTCTTTACATGCAGCTCTTTGCACCAACAACTTTGGCCCCTGCTCGTGATTTTTTGCTGCTTCGCTACACTTCTGTTTTGGAAGATGGCAGCCTCGTGGTCTGTGAAAGATCACTTAACAATACTCAGAATGGTCCAAACATGCCACCAGTACAGAATTTTGTACGAGCAGAAATGCTGCCGAGCGGGTATTTGATTAGACCTTGTGAAGGGGGAGGATCGATTATTCGTATTGTTGATCATATGGATTTAGAGCCTAGAAGCGTTCCTGAAGTGTTACGCCCACTGTACGAGTCGTCTATTCTGCTTGCTCAGAGGAATACAATGGCAGCTTTGCGCCTTCTGAGGCAGATATCGCAAGAGATTTCTCAGCCAAATGTCTCGGGATGGGGAAAACGACCGGCTGCACTACGCGGCCTCAGCCAAAAATTAACGAGGAGTTTTAACGAAGCCGTTAATGGGTTCACTGACGACGGATGGTCAATGCTCGAGAGCGATGGGGTTGATGATGTTACTCTTCTGGTCAACTCTTCTCCTTCCAAGATGATGGGAGGAGCTCTTCATTATGCCAATGGATTCCAATCAATGGCCTCAGCTGTTCTATGTGCCAAAGCTTCCATGTTATTTCAAGATGTTCCTCCGGCAATTCTTCTAAGATTTCTTCGAGAACACCGATCTGAATGGGCAGATTGTAGCATTGATGCTTATTCAGCTGCATCGATTAAAATGAGTCCACATGATGCCTTTCCTGGCTCTCAACTCGGAACGTATGGTGGGCAGGTTATTCTTCCACTGGCTCACACCATCGAACATGAAGAGGCAAGCAGTTTTTTCGTTAAAATCGAAAATATAGGCCACTATCGTGATGACATGCTCATGCCTGGCGACATCTTCCTTCTGCAACTTTGCAGTGGAATGGATGAGAATTCTGTAGGCACATGTGCTGAACTCGTATTTGCTCCCATTGATGCCTCCTTTTCCGATGATGCGCCTATTTTATCTTCTGGATTTGGCATCATTCCTGTAGATTCGAAGATGGACACCACAAGTCCAAATCGAACTCTTGATCTTACCTCAGCTCTAGATGTCGGAAAGGAAGGAAGCAAAGGGTCGGGTGATTATGCAGGACAATATGGAAAATTGAAATCGGTTTTGACAATCGCATTCCAATTTGCATTTCAAGCTCACCTTCAAGAGAATGTTGCAGCCATGGCCAGACAGTATGTGAGGAGGATCATAGCTTCTGTCCAGCGAGTGGCTTTCGCTCTCTCACCTGCTCGTTTAGATTCTTTCTCGTCTCTTCATTCTCCTCCTCAAACTCCCCAAGCTCTCACACTCACTCGATGGATCTGCCATAGCTACCGGTGCTTTCTAGGGGTGGAACTGCTGAAGAATGAAGAAAGTGATTCTCTTCTGAAAACCCTTTGGCATCACTCAGATGCAGTTATGTGCTGTTCTTTAAAGATGCAGCCAGTTCCAGTTTTTACATTTGCAAATCAGGCAGGACTGGATATGCTAGAGACAACCTTAATAGCTCTGAACGACATAACTCTGGAAATGATCTTTGATGATAATGGAAAGAAGACATTATGCTCTGAGTTCCCCCACATACTTCAGCAGGGTTTTGTTTGCCTTCAAGCTGGGTTCTGCTTGTCGAGCATGGGGAGACCGGTTTCATACGACAGAGCGGTGGCCTGGAAGGTGTTGGACGAAGATGAAAATGCCCAGTCTATCTGCTTCATGTTCATCAACTGGTCTTTCGCCCAAAACTAG 2607 46.53 MLVLRKFGYITLSRSYSVNLQWEVMAVTSSCKDANKIAMDNGKYVRYTPEQVEALERLYYECPKPSSIRRQQLIKECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNRLLMEENDRLQKQVSQLVYDNTYFRQETQNAALASADTSCDSVVTSGQHHQTPQHPLKDASPAGLLSIAEETLTEFISKATGTAVEWVQLPGMKPGPDSIGIVAISNSSAGVAARACALVGLEPTRVAEILKDRPSWLRDCRAVDVLNMLSTGNGGTIELLYMQLFAPTTLAPARDFLLLRYTSVLEDGSLVVCERSLNNTQNGPNMPPVQNFVRAEMLPSGYLIRPCEGGGSIIRIVDHMDLEPRSVPEVLRPLYESSILLAQRNTMAALRLLRQISQEISQPNVSGWGKRPAALRGLSQKLTRSFNEAVNGFTDDGWSMLESDGVDDVTLLVNSSPSKMMGGALHYANGFQSMASAVLCAKASMLFQDVPPAILLRFLREHRSEWADCSIDAYSAASIKMSPHDAFPGSQLGTYGGQVILPLAHTIEHEEASSFFVKIENIGHYRDDMLMPGDIFLLQLCSGMDENSVGTCAELVFAPIDASFSDDAPILSSGFGIIPVDSKMDTTSPNRTLDLTSALDVGKEGSKGSGDYAGQYGKLKSVLTIAFQFAFQAHLQENVAAMARQYVRRIIASVQRVAFALSPARLDSFSSLHSPPQTPQALTLTRWICHSYRCFLGVELLKNEESDSLLKTLWHHSDAVMCCSLKMQPVPVFTFANQAGLDMLETTLIALNDITLEMIFDDNGKKTLCSEFPHILQQGFVCLQAGFCLSSMGRPVSYDRAVAWKVLDEDENAQSICFMFINWSFAQN 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3749638 3754057 + Bda016402.1 Bda03g00434 3693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00434 868 Coils Coil 108 132 - -
Bda03g00434 868 SUPERFAMILY Homeodomain-like 43 104 IPR009057 -
Bda03g00434 868 CDD bZIP 95 134 - -
Bda03g00434 868 Gene3D - 36 109 - -
Bda03g00434 868 SUPERFAMILY Bet v1-like 186 396 - -
Bda03g00434 868 CDD START_ArGLABRA2_like 181 396 - -
Bda03g00434 868 CDD homeodomain 43 103 IPR001356 GO:0003677
Bda03g00434 868 PANTHER CLASS III HD-ZIP PROTEIN CNA1 29 865 - -
Bda03g00434 868 SMART START_1 186 396 IPR002913 GO:0008289
Bda03g00434 868 Pfam START domain 187 395 IPR002913 GO:0008289
Bda03g00434 868 ProSiteProfiles START domain profile. 177 391 IPR002913 GO:0008289
Bda03g00434 868 Pfam MEKHLA domain 723 865 IPR013978 -
Bda03g00434 868 SMART HOX_1 40 106 IPR001356 GO:0003677
Bda03g00434 868 Pfam Homeodomain 43 101 IPR001356 GO:0003677
Bda03g00434 868 ProSiteProfiles 'Homeobox' domain profile. 38 102 IPR001356 GO:0003677
Bda03g00434 868 Gene3D - 221 397 IPR023393 -
Bda03g00434 868 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 29 865 IPR044830 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00434 Bda-Chr3:3749638 Bda10g00831 Bda-Chr10:42695627 0 dispersed
Bda11g00826 Bda-Chr11:8184574 Bda03g00434 Bda-Chr3:3749638 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15654 PF01852 START 8.40E-50 CL0209 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00434 K09338 - tcc:18587987 1379.0