Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00446 ATGGCTGAGAGAAGGCGAAGAAAGAGATTGAACGATCGTCTTTCCATGCTAAGATCCATCGTTCCAAAAATAAGCAAGATAGACAGAACAGCCATACTAGGAGACGCCATTGATTACACGAAAGAACTTCTGGAAAAAATCAACAACTTGCAGCAAGAGATTGAAATGGATTCTAACCACCACCAGGTCCAGATGAGCGTTTTCAAGAATGTCAACCCAAATGAGTTTCTACCCAGAAATCCACCAAGGTTTGATGTAGAAAGGAGAAAAGAAGACACTCGGATAGAGATTCTCTGTTCCAGTAAATATGGGATGTTGTTATCCGCAGTGAACTCCATTGAAGCACTAGGCCTCGAGATTCAGCACTGTGTTATTAGCTGTTTCAATGACTTCACGATGCAAGCTTCCTGTTCAGAGGAACTGGAGCGTAGAGACTTGATAAGCCAAGAGGAAATCAAACGAGCTTTACTTCAAAACTCAGGATATGAAGGAAGATGCCTTTAG 504 42.06 MAERRRRKRLNDRLSMLRSIVPKISKIDRTAILGDAIDYTKELLEKINNLQQEIEMDSNHHQVQMSVFKNVNPNEFLPRNPPRFDVERRKEDTRIEILCSSKYGMLLSAVNSIEALGLEIQHCVISCFNDFTMQASCSEELERRDLISQEEIKRALLQNSGYEGRCL 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3823985 3824798 - Bda016414.1 Bda03g00446 3705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00446 167 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 167 - -
Bda03g00446 167 SMART finulus 1 49 IPR011598 GO:0046983
Bda03g00446 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 43 IPR011598 GO:0046983
Bda03g00446 167 PANTHER DNA BINDING PROTEIN 1 167 - -
Bda03g00446 167 Pfam Helix-loop-helix DNA-binding domain 2 43 IPR011598 GO:0046983
Bda03g00446 167 Gene3D - 1 59 IPR036638 GO:0046983
Bda03g00446 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 66 IPR036638 GO:0046983
Bda03g00446 167 Coils Coil 40 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00446 Bda-Chr3:3823985 Bda10g00040 Bda-Chr10:918409 1.63E-53 dispersed
Bda03g00446 Bda-Chr3:3823985 Bda04g00147 Bda-Chr4:4033405 1.70E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15655 PF00010 HLH 8.00E-09 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00446 - - csin:114263443 238.039