Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda03g00449 | ATGGCAGAGAGAGTGCAAGATAATGATGGCTGTTTTACTATTAACCATGTCCGTGCTGGAGACTATAATCTTTACTCATGGGTCCGTGGCTTTATTGGAGACTACCATTTTGATGCTGTCATCACTATAGTGCCTGAATCTTTCATCGAAATGGGTGATCTTGTATATCAACCGCCAAGAAGTGGGCCAACTTTGTGGGAAATAGGCATACCTGATCGTTCTGCTGCTGAGTTTTTTGTTCCTGATCCCAATCCGTCCCATATGAATAAGCTATTTGTCAATCATCCTGACAGGTTCAGACAGTATGGTTTATGGGAGAGATACACAGAATTGTATCCTCACGATGATTGA | 351 | 42.17 | MAERVQDNDGCFTINHVRAGDYNLYSWVRGFIGDYHFDAVITIVPESFIEMGDLVYQPPRSGPTLWEIGIPDRSAAEFFVPDPNPSHMNKLFVNHPDRFRQYGLWERYTELYPHDD | 116 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 3844312 | 3845140 | + | Bda016417.1 | Bda03g00449 | 3708 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda03g00449 | 116 | Pfam | Polysaccharide lyase family 4, domain III | 64 | 103 | IPR029411 | - | |
| Bda03g00449 | 116 | Pfam | Polysaccharide lyase family 4, domain II | 7 | 45 | IPR029413 | - | |
| Bda03g00449 | 116 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 6 | 116 | - | - | |
| Bda03g00449 | 116 | SUPERFAMILY | Galactose-binding domain-like | 61 | 106 | IPR008979 | - | |
| Bda03g00449 | 116 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 6 | 116 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda03g00449 | Bda-Chr3:3844312 | Bda13g01366 | Bda-Chr13:36211623 | 4.05E-51 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda03g00449 | K18195 | - | jre:109004812 | 191.815 |