Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda03g00450 | ATGTTCGGTCATTCCCAACCCTTGAACATGCATAATCGGATATCTTCTGTTCCCGACGACGAAGATGACGGCGCAGGCACCGATGCATTGGACAACCCTCTCATGCGCTACGATGCTCACGCATTGGAAGACGCTGCAGGCGCTGTTGGTGAAGATGTCGCATCCGACGATGTGTACGTTCCCTCTGCTGGGGGTGTCGAATTGGCTGTTCAACGGGGCGATAGTACGAGCCAGCTCTCGCTTTCGTTTCGTGGCCAAGTTTATGTTTTTGACGCCGTCACACCTGATAAGGTTCAAGCAGTATTACTGCTGTTGGGGGGATACGAGCTATCTACGACACAGACAGGCGTGGAGATGGGGCATCAGAATCTGAGAAGTGTGATGGACCTCCCAAGGCGTTGTAGTCAACCACAGAGAGCCGCATCATTAAATAGGTTCAGGCAGAAAAGAAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGCGTCCGGCAGGAAGTTGCCCTCAGGATGCAACGTAACAAGGGACAATTTACTTCCTCTAAGAAGCCTGATGGAACTTATAGCTGGGATGCTGTCCAAGAGTTGGGTCAAGTTGAAAGCCCTCCAGAAACTTTATGTACACATTGTGGCATAAGCTCAAAAGCCACTCCTATGATGCGGCGAGGCCCATCTGGACCAAGGTCTCTTTGCAATGCTTGTGGACTCTTTTGGGCAAACAGGGGTACTTTGAGAGATCTTTCTAAAAGAAACCAAGACCATCCTCTGTCCTTCACAGAGCAGGTACACTCTCCACCATGA | 801 | 49.69 | MFGHSQPLNMHNRISSVPDDEDDGAGTDALDNPLMRYDAHALEDAAGAVGEDVASDDVYVPSAGGVELAVQRGDSTSQLSLSFRGQVYVFDAVTPDKVQAVLLLLGGYELSTTQTGVEMGHQNLRSVMDLPRRCSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGTYSWDAVQELGQVESPPETLCTHCGISSKATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDHPLSFTEQVHSPP | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3847408 | 3850897 | - | Bda016418.1 | Bda03g00450 | 3709 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda03g00450 | 266 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 199 | 252 | - | - | |
Bda03g00450 | 266 | ProSiteProfiles | GATA-type zinc finger domain profile. | 201 | 260 | IPR000679 | GO:0006355|GO:0043565 | |
Bda03g00450 | 266 | SMART | tify_2 | 72 | 107 | IPR010399 | - | |
Bda03g00450 | 266 | ProSiteProfiles | Tify domain profile. | 72 | 107 | IPR010399 | - | |
Bda03g00450 | 266 | Gene3D | - | 198 | 256 | IPR013088 | GO:0006355|GO:0008270 | |
Bda03g00450 | 266 | SMART | GATA_3 | 201 | 254 | IPR000679 | GO:0006355|GO:0043565 | |
Bda03g00450 | 266 | Pfam | CCT motif | 139 | 181 | IPR010402 | GO:0005515 | |
Bda03g00450 | 266 | CDD | ZnF_GATA | 207 | 253 | IPR000679 | GO:0006355|GO:0043565 | |
Bda03g00450 | 266 | ProSitePatterns | GATA-type zinc finger domain. | 207 | 234 | IPR000679 | GO:0006355|GO:0043565 | |
Bda03g00450 | 266 | PANTHER | GATA TRANSCRIPTION FACTOR 25 | 1 | 264 | - | - | |
Bda03g00450 | 266 | ProSiteProfiles | CCT domain profile. | 139 | 181 | IPR010402 | GO:0005515 | |
Bda03g00450 | 266 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Bda03g00450 | 266 | Pfam | tify domain | 75 | 106 | IPR010399 | - | |
Bda03g00450 | 266 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 1 | 264 | IPR045280 | GO:0006355 | |
Bda03g00450 | 266 | Pfam | GATA zinc finger | 207 | 243 | IPR000679 | GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda03g00450 | Bda11g00806 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00450 | Bda-Chr3:3847408 | Bda11g00807 | Bda-Chr11:7991287 | 1.41E-64 | dispersed | |
Bda06g01129 | Bda-Chr6:40159870 | Bda03g00450 | Bda-Chr3:3847408 | 4.45E-87 | transposed | |
Bda13g01362 | Bda-Chr13:36128240 | Bda03g00450 | Bda-Chr3:3847408 | 2.99E-72 | transposed | |
Bda11g00806 | Bda-Chr11:7985592 | Bda03g00450 | Bda-Chr3:3847408 | 3.55E-173 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15656 | PF06203 | CCT | 1.50E-15 | CL0281 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda03g00450 | - | - | jre:108988673 | 360.147 |