Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00450 ATGTTCGGTCATTCCCAACCCTTGAACATGCATAATCGGATATCTTCTGTTCCCGACGACGAAGATGACGGCGCAGGCACCGATGCATTGGACAACCCTCTCATGCGCTACGATGCTCACGCATTGGAAGACGCTGCAGGCGCTGTTGGTGAAGATGTCGCATCCGACGATGTGTACGTTCCCTCTGCTGGGGGTGTCGAATTGGCTGTTCAACGGGGCGATAGTACGAGCCAGCTCTCGCTTTCGTTTCGTGGCCAAGTTTATGTTTTTGACGCCGTCACACCTGATAAGGTTCAAGCAGTATTACTGCTGTTGGGGGGATACGAGCTATCTACGACACAGACAGGCGTGGAGATGGGGCATCAGAATCTGAGAAGTGTGATGGACCTCCCAAGGCGTTGTAGTCAACCACAGAGAGCCGCATCATTAAATAGGTTCAGGCAGAAAAGAAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGCGTCCGGCAGGAAGTTGCCCTCAGGATGCAACGTAACAAGGGACAATTTACTTCCTCTAAGAAGCCTGATGGAACTTATAGCTGGGATGCTGTCCAAGAGTTGGGTCAAGTTGAAAGCCCTCCAGAAACTTTATGTACACATTGTGGCATAAGCTCAAAAGCCACTCCTATGATGCGGCGAGGCCCATCTGGACCAAGGTCTCTTTGCAATGCTTGTGGACTCTTTTGGGCAAACAGGGGTACTTTGAGAGATCTTTCTAAAAGAAACCAAGACCATCCTCTGTCCTTCACAGAGCAGGTACACTCTCCACCATGA 801 49.69 MFGHSQPLNMHNRISSVPDDEDDGAGTDALDNPLMRYDAHALEDAAGAVGEDVASDDVYVPSAGGVELAVQRGDSTSQLSLSFRGQVYVFDAVTPDKVQAVLLLLGGYELSTTQTGVEMGHQNLRSVMDLPRRCSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGTYSWDAVQELGQVESPPETLCTHCGISSKATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDHPLSFTEQVHSPP 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3847408 3850897 - Bda016418.1 Bda03g00450 3709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00450 266 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 252 - -
Bda03g00450 266 ProSiteProfiles GATA-type zinc finger domain profile. 201 260 IPR000679 GO:0006355|GO:0043565
Bda03g00450 266 SMART tify_2 72 107 IPR010399 -
Bda03g00450 266 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Bda03g00450 266 Gene3D - 198 256 IPR013088 GO:0006355|GO:0008270
Bda03g00450 266 SMART GATA_3 201 254 IPR000679 GO:0006355|GO:0043565
Bda03g00450 266 Pfam CCT motif 139 181 IPR010402 GO:0005515
Bda03g00450 266 CDD ZnF_GATA 207 253 IPR000679 GO:0006355|GO:0043565
Bda03g00450 266 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355|GO:0043565
Bda03g00450 266 PANTHER GATA TRANSCRIPTION FACTOR 25 1 264 - -
Bda03g00450 266 ProSiteProfiles CCT domain profile. 139 181 IPR010402 GO:0005515
Bda03g00450 266 MobiDBLite consensus disorder prediction 1 31 - -
Bda03g00450 266 Pfam tify domain 75 106 IPR010399 -
Bda03g00450 266 PANTHER GATA TRANSCRIPTION FACTOR 28 1 264 IPR045280 GO:0006355
Bda03g00450 266 Pfam GATA zinc finger 207 243 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00450 Bda11g00806 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00450 Bda-Chr3:3847408 Bda11g00807 Bda-Chr11:7991287 1.41E-64 dispersed
Bda06g01129 Bda-Chr6:40159870 Bda03g00450 Bda-Chr3:3847408 4.45E-87 transposed
Bda13g01362 Bda-Chr13:36128240 Bda03g00450 Bda-Chr3:3847408 2.99E-72 transposed
Bda11g00806 Bda-Chr11:7985592 Bda03g00450 Bda-Chr3:3847408 3.55E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15656 PF06203 CCT 1.50E-15 CL0281 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00450 - - jre:108988673 360.147