Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00450 ATGTTCGGTCATTCCCAACCCTTGAACATGCATAATCGGATATCTTCTGTTCCCGACGACGAAGATGACGGCGCAGGCACCGATGCATTGGACAACCCTCTCATGCGCTACGATGCTCACGCATTGGAAGACGCTGCAGGCGCTGTTGGTGAAGATGTCGCATCCGACGATGTGTACGTTCCCTCTGCTGGGGGTGTCGAATTGGCTGTTCAACGGGGCGATAGTACGAGCCAGCTCTCGCTTTCGTTTCGTGGCCAAGTTTATGTTTTTGACGCCGTCACACCTGATAAGGTTCAAGCAGTATTACTGCTGTTGGGGGGATACGAGCTATCTACGACACAGACAGGCGTGGAGATGGGGCATCAGAATCTGAGAAGTGTGATGGACCTCCCAAGGCGTTGTAGTCAACCACAGAGAGCCGCATCATTAAATAGGTTCAGGCAGAAAAGAAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGCGTCCGGCAGGAAGTTGCCCTCAGGATGCAACGTAACAAGGGACAATTTACTTCCTCTAAGAAGCCTGATGGAACTTATAGCTGGGATGCTGTCCAAGAGTTGGGTCAAGTTGAAAGCCCTCCAGAAACTTTATGTACACATTGTGGCATAAGCTCAAAAGCCACTCCTATGATGCGGCGAGGCCCATCTGGACCAAGGTCTCTTTGCAATGCTTGTGGACTCTTTTGGGCAAACAGGGGTACTTTGAGAGATCTTTCTAAAAGAAACCAAGACCATCCTCTGTCCTTCACAGAGCAGGTACACTCTCCACCATGA 801 49.69 MFGHSQPLNMHNRISSVPDDEDDGAGTDALDNPLMRYDAHALEDAAGAVGEDVASDDVYVPSAGGVELAVQRGDSTSQLSLSFRGQVYVFDAVTPDKVQAVLLLLGGYELSTTQTGVEMGHQNLRSVMDLPRRCSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGTYSWDAVQELGQVESPPETLCTHCGISSKATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQDHPLSFTEQVHSPP 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3847408 3850897 - Bda016418.1 Bda03g00450 3709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00450 266 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 252 - -
Bda03g00450 266 ProSiteProfiles GATA-type zinc finger domain profile. 201 260 IPR000679 GO:0006355|GO:0043565
Bda03g00450 266 SMART tify_2 72 107 IPR010399 -
Bda03g00450 266 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Bda03g00450 266 Gene3D - 198 256 IPR013088 GO:0006355|GO:0008270
Bda03g00450 266 SMART GATA_3 201 254 IPR000679 GO:0006355|GO:0043565
Bda03g00450 266 Pfam CCT motif 139 181 IPR010402 GO:0005515
Bda03g00450 266 CDD ZnF_GATA 207 253 IPR000679 GO:0006355|GO:0043565
Bda03g00450 266 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355|GO:0043565
Bda03g00450 266 PANTHER GATA TRANSCRIPTION FACTOR 25 1 264 - -
Bda03g00450 266 ProSiteProfiles CCT domain profile. 139 181 IPR010402 GO:0005515
Bda03g00450 266 MobiDBLite consensus disorder prediction 1 31 - -
Bda03g00450 266 Pfam tify domain 75 106 IPR010399 -
Bda03g00450 266 PANTHER GATA TRANSCRIPTION FACTOR 28 1 264 IPR045280 GO:0006355
Bda03g00450 266 Pfam GATA zinc finger 207 243 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00450 - - - jre:108988673 360.147
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00450 Bda11g00806 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00450 Bda-Chr3:3847408 Bda11g00807 Bda-Chr11:7991287 1.41E-64 dispersed
Bda06g01129 Bda-Chr6:40159870 Bda03g00450 Bda-Chr3:3847408 4.45E-87 transposed
Bda13g01362 Bda-Chr13:36128240 Bda03g00450 Bda-Chr3:3847408 2.99E-72 transposed
Bda11g00806 Bda-Chr11:7985592 Bda03g00450 Bda-Chr3:3847408 3.55E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g531 . . . Bda03g00450 Bpe02g00145 . . . Cmo05g00561 . . . . Car12g00188 . . . Bhi04g01395 Tan02g2468 . . Hepe10g0439 . . . . . . . . . . . . . . . . . . . Bda11g00806 . . . . Bma02g00116 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01015 Csa02g02198 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00806 CCT 16 264 Tify Gene Family AT4G24470 53.3 1.8e-62 236.5
Bda03g00450 CCT 65 264 Tify Gene Family AT4G24470 62.6 5.7e-61 231.5
Bda06g01129 . 76 285 Tify Gene Family AT4G24470 51.5 2.5e-48 189.5
Bda06g01129 . 89 279 Tify Gene Family AT1G51600 62.4 1.3e-57 220.3
Bda13g01362 . 25 241 Tify Gene Family AT1G51600 53.0 2.3e-51 199.5
Bda03g00450 CCT 46 249 Tify Gene Family AT1G51600 54.7 7.4e-50 194.5
Bda11g00807 . 68 246 Tify Gene Family AT1G51600 60.8 1.5e-47 186.8
Bda11g00806 CCT 16 264 Tify Gene Family AT4G24470 53.3 1.8e-62 236.5
Bda03g00450 CCT 65 264 Tify Gene Family AT4G24470 62.6 5.7e-61 231.5
Bda06g01129 . 76 285 Tify Gene Family AT4G24470 51.5 2.5e-48 189.5
Bda06g01129 . 89 279 Tify Gene Family AT1G51600 62.4 1.3e-57 220.3
Bda13g01362 . 25 241 Tify Gene Family AT1G51600 53.0 2.3e-51 199.5
Bda03g00450 CCT 46 249 Tify Gene Family AT1G51600 54.7 7.4e-50 194.5
Bda11g00807 . 68 246 Tify Gene Family AT1G51600 60.8 1.5e-47 186.8
Bda11g00596 CCT 1 174 Tify Gene Family AT4G14713 51.6 1.2e-41 166.8
Bda08g00254 CCT 1 184 Tify Gene Family AT4G14720 53.1 9.5e-43 171.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15656 PF06203 CCT 1.50E-15 CL0281 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00450 Bda_Chr03 FPKM 2.477064 3.062709 4.296566 3.81643 2.869714 3.49605 3.699409 8.193411 8.975519