Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00458 ATGCAGGGAGATTATGCAGAGCCTGAGGGCGAACCTAGCGCCATGTTCTCCAAGCTTCATAATCCTCAACCTCAATCCTTCGTCCCCTTTTCTCACCCCTTTCAACTCTCTGCAAGAGAATGTCAGAACCCAGAAGAAGAAGAAGGCGAAAAATTATGCCCCGCCACTCGCACACCGTCCAAGAAGCCCGCCGAGCTAAGCTCTGCCGACGGCGCTACCATTGAAGTCCTCAAACGACCCAGGGGTCGCCCTCCTGGCTCAAAGAACAAACCTAAACCGACTGCTGCTGTTGCCCCCGACCCAGAGCCTTCGATGAGCTCTTATATTCTCGAAGTTACCGGAGGTAACGATGTCATCGGAGCCATTGCTGGCTTTTGTTGCCGAAAAAACATAGGGCTTACCGTTCTCAGTGGCTCCGGGACTGTTTCTGATGTCACTATTCGGCCCTCTACGGGAGCGCCAATGATGTTTCGTGGTCGGTTTGATATTATCTCCATTAGCGCGACCTTTCTCCCCAATTCAACCACCTTTTCGGTTCCCAATGGCTTCGTTATCTATCTGGCTGGTACTCACGGCCATATCTTTGGGGGTTTAGTCTGTGGAGAATTGATCGCCGATGGAACGGTGTTTGTGATAGCCTCTTCGTTCAATAATCCGTCATATCACCGACTCCCGGACGAAGACGTGGCCGGAAACTCGGCCGATGCAAGCGGCGGTGAGAAAAACTCTTCTCCAGGCTCCGTTGCCGGAGATAGTGGCGGTCACGCTCCGGCGCAATCGAGCGGCATGCTTATGTATGGCAGTCACGTTTCTTCCAATGTAGTTTGGACTCCCACCGCCAGACCACCATTCAACGGCGATACTAGCCGATAA 873 52.92 MQGDYAEPEGEPSAMFSKLHNPQPQSFVPFSHPFQLSARECQNPEEEEGEKLCPATRTPSKKPAELSSADGATIEVLKRPRGRPPGSKNKPKPTAAVAPDPEPSMSSYILEVTGGNDVIGAIAGFCCRKNIGLTVLSGSGTVSDVTIRPSTGAPMMFRGRFDIISISATFLPNSTTFSVPNGFVIYLAGTHGHIFGGLVCGELIADGTVFVIASSFNNPSYHRLPDEDVAGNSADASGGEKNSSPGSVAGDSGGHAPAQSSGMLMYGSHVSSNVVWTPTARPPFNGDTSR 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3960199 3961071 + Bda016426.1 Bda03g00458 3717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00458 290 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 282 IPR014476 GO:0003680
Bda03g00458 290 MobiDBLite consensus disorder prediction 224 263 - -
Bda03g00458 290 Pfam Plants and Prokaryotes Conserved (PCC) domain 108 218 IPR005175 -
Bda03g00458 290 SUPERFAMILY AF0104/ALDC/Ptd012-like 104 229 - -
Bda03g00458 290 MobiDBLite consensus disorder prediction 41 55 - -
Bda03g00458 290 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 31 282 - -
Bda03g00458 290 CDD DUF296 108 216 IPR005175 -
Bda03g00458 290 Gene3D - 105 237 - -
Bda03g00458 290 MobiDBLite consensus disorder prediction 1 103 - -
Bda03g00458 290 MobiDBLite consensus disorder prediction 18 38 - -
Bda03g00458 290 ProSiteProfiles PPC domain profile profile. 102 237 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00458 Bda-Chr3:3960199 Bda07g00512 Bda-Chr7:6538506 4.31E-37 dispersed
Bda11g00797 Bda-Chr11:7938525 Bda03g00458 Bda-Chr3:3960199 8.32E-111 wgd
Bda13g01356 Bda-Chr13:35930228 Bda03g00458 Bda-Chr3:3960199 3.35E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00458 - - zju:107421268 311.227