Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00461 ATGGCCTCAATCTCGGGCATTTGCCCGTCTACCATGGTTCTCAAGCACAAAATGCTTCTCAAAAGAGCTAGTATTCCATCGGTCTCGTTTCGTTCTACAGTTATCGACGAGAGTTTTGGTCGGCGCCTGGATCGGTCTACAATCAGGGCGATATCGGCTGATTTATCGAGCACTGATGGACATTTGACAGAGCAGAAGAAGGGGTTGGAGAAAGACTCTCGATTGCTGTGGCGGAGGTACGTTGACTGGCTGTATCAGCATAAAGAGCTGGGGTTGTTTCTGGATGTTAGTAGGATCGGGTTCACGGATGAGTTCGCGAGGCAGATGGAGCCCCGTTTCCAGGCCGCTTTCCGAGCTATGGCGGAGCTCGAGAAGGGAGCGATCGCAAATCCTGATGAGGGTCGCATGGTTGGGCATTATTGGCTCAGAGACTCTAATCTTGCGCCTAACTCGTTCTTGAGGTTGCAAATTGAGAATTCCCTGGAAGCTTTGTGCAAGTTTGCTGACGATGTCATTAGTGGTAAGATCAAGCCACCATCGAAAGGTCGCTTTACTCACATACTTTCTGTTGGGATTGGAGGATCAGCACTTGGTCCACAGTTCGTTGCCGAGGCATTAGCTCCTGATAATCCTCCTCTCGAGATAAGATTCGTTGACAACACTGATCCAGCAGGAATTGATCATCAGATTGCCCAGCTTGGACCAGAGTTGGCTTCTACCCTTGTAATAGTAATTTCAAAGAGTGGAGGTACTCCTGAAACTAGAAATGGTTTGTTGGAAGTTCAGAAAGCATTTCGTGAAGCTGGACTGGATTTTGCAAAACAGCAGGGTGTTGCTGTTACACAAGATAATTCATTGTTGGACAATACTGCAAAACTCGAAGGCTGGTTAGCTAGGTTTCCCATGTTTGATTGGGTGGGTGGTAGAACATCTGAAATGTCGGCTGTTGGTCTTCTTCCTGCTGCACTTCAGGGAATCAACATTAAGGAAATGCTTGCTGGTGCAACGTTGATGGATGAGGCAACTAGAACAACTGCAATTGAAAATAATCCTGCAGCATTACTAGCATTATGCTGGTATTGGGCATGTGATGGCGTAGGATCCAAGGATATGGTAGTCCTTCCATACAAGGACAGCCTATTGTTATTTAGTCGCTACTTACAACAGTTAGTTATGGAATCGCTTGGGAAAGAGTTTGACCTTGATGAAATCGGTATGGTTTTTGAGTTGAACTTCTTATCTTTGCAGGTGAATCAAGGACTTACTGTCTACGGAAACAAAGGGAGCACAGATCAGCATGCCTATATTCAACAATTGAGAGAAGGCGTCCACAACTTTTTTGTTACCTTCATTGAAGTACTACGTGATAGGCCTCCTGGGCATGATTGGGAGCTAGAGCCAGGTGTCACTTGTGGGGATTACCTGTTTGGCATGTTACAGGGAACAAGATCAGCTCTTTATGCAAATGATAGGGAGTCCATTACAGTCACTGTTCAAGAAGTCACTCCTAGATCTGTTGGTGCTCTTATTGCTCTTTATGAAAGAGCGGTTGGTTTATATGCTTCTCTTATCAACATTAATGCATATCATCAACCTGGAGTGGAAGCAGGGAAAAAAGCAGCCGGAGAAGTGTTAGCCCTTCAAAAACGAGTATTGGCAGTACTAAATGAGGCTAGGTGCTTTATCTCTCTCCTGTTTTTTTTTTTTCAATTTTGCCTCCGTTTCTGTATCGAAATGATTTACAAGATTATTGTTCACATGTCCGCCAATGATAGAGCAATAATAGCTGAAGGTAGCTGTGGTTCGCCACGAAGCATCAAGGTTTTCCTAGGCGAGTGCAGGGTCGATGAACAGCTATTTGCATAG 1866 45.12 MASISGICPSTMVLKHKMLLKRASIPSVSFRSTVIDESFGRRLDRSTIRAISADLSSTDGHLTEQKKGLEKDSRLLWRRYVDWLYQHKELGLFLDVSRIGFTDEFARQMEPRFQAAFRAMAELEKGAIANPDEGRMVGHYWLRDSNLAPNSFLRLQIENSLEALCKFADDVISGKIKPPSKGRFTHILSVGIGGSALGPQFVAEALAPDNPPLEIRFVDNTDPAGIDHQIAQLGPELASTLVIVISKSGGTPETRNGLLEVQKAFREAGLDFAKQQGVAVTQDNSLLDNTAKLEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGINIKEMLAGATLMDEATRTTAIENNPAALLALCWYWACDGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDEIGMVFELNFLSLQVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFVTFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANDRESITVTVQEVTPRSVGALIALYERAVGLYASLININAYHQPGVEAGKKAAGEVLALQKRVLAVLNEARCFISLLFFFFQFCLRFCIEMIYKIIVHMSANDRAIIAEGSCGSPRSIKVFLGECRVDEQLFA 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3984819 3989770 - Bda016430.2 Bda03g00461 3720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00461 621 CDD SIS_PGI_2 369 544 IPR035482 -
Bda03g00461 621 PRINTS Glucose-6-phosphate isomerase signature 187 206 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda03g00461 621 PRINTS Glucose-6-phosphate isomerase signature 489 507 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda03g00461 621 PRINTS Glucose-6-phosphate isomerase signature 521 534 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda03g00461 621 PRINTS Glucose-6-phosphate isomerase signature 376 397 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda03g00461 621 PRINTS Glucose-6-phosphate isomerase signature 507 521 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda03g00461 621 PRINTS Glucose-6-phosphate isomerase signature 300 318 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda03g00461 621 Hamap Glucose-6-phosphate isomerase [pgi]. 48 548 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda03g00461 621 SUPERFAMILY SIS domain 77 548 IPR046348 GO:0097367|GO:1901135
Bda03g00461 621 ProSitePatterns Phosphoglucose isomerase signature 2. 521 538 IPR018189 GO:0004347|GO:0006094|GO:0006096
Bda03g00461 621 Gene3D - 175 319 - -
Bda03g00461 621 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 2 617 - -
Bda03g00461 621 CDD SIS_PGI_1 158 323 IPR035476 -
Bda03g00461 621 Gene3D - 320 530 - -
Bda03g00461 621 Pfam Phosphoglucose isomerase 486 545 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda03g00461 621 Pfam Phosphoglucose isomerase 123 455 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda03g00461 621 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 2 617 IPR001672 GO:0004347|GO:0006094|GO:0006096
Bda03g00461 621 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 46 554 IPR001672 GO:0004347|GO:0006094|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00461 K01810 GPI, pgi; glucose-6-phosphate isomerase [EC:5.3.1.9] - vvi:100262681 961.829
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00916 Bda03g00461 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00461 Bda-Chr3:3984819 Bda04g01121 Bda-Chr4:62044065 1.25E-33 dispersed
Bda01g00534 Bda-Chr1:32293046 Bda03g00461 Bda-Chr3:3984819 1.21E-30 transposed
Bda13g00729 Bda-Chr13:8788078 Bda03g00461 Bda-Chr3:3984819 6.45E-45 transposed
Bda01g00916 Bda-Chr1:42298523 Bda03g00461 Bda-Chr3:3984819 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g489 . . Bda01g00916 Bda03g00461 . Bpe04g00422 Bma04g00436 . . Cmo12g00145 . . . Car12g00170 . . Cpe07g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01160 . . . . . . Cma12g00187 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009057 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00461 Bda_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0