Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00462 ATGAATTTTGTGATGGTTTCTAGGAAGTGCTGCTTCTCGACTGCTGCTTTATCTACACATACATCGTCACTTTCATGGAACTCTTTTCAGTTTTGGAAACCAACATCCCCTAAACCAGATCCTCCGGCTGAGTCCTCAACTACTTCTGCCTCAGTTCAAAAGAAAACCAGGTATATCTCTCACGAGAATGCTATACAATTAATCAAACATGAACGTGATCCTCAACATGCCTTGGAAATATTTAATATGGTATCAGAACAAAAAGGTTTTAATCATAATCATGCCACTTATGCTACCATTCTTCATAAACTTGGTCGCTCAAAGAAATTTCAGGCCATTGATGCAGTTCTGCATCAAATGACCTACGAAACATGCAAATTTCATGAGATTATATTCTTGAACCTCATGAAGCATTTTTCAAAGTCCTCTCTTCATGAAAGGGTTCTCGACATGTTCTATGCAATTCAGTCAATAGTTAGGGATAAGCCTTCTGTTAAAGCCATCAGCACTTGTCTTAATCTCCTAGTTGAGTCAGACAAGATGGATTTGGCTCGAAAGTTGCTCTTGCATTCAAGAAAGAAGCTCGGCTTGAAACCAAATACCTGTATCTACAACATCTTGGTTAAGCACCATTGTAAGAAGGGGGATATCAAATCAGCTTTTGAAGTCATGAAGGAAATGGAAAAGACCAAGATTTCTTTTCCAAATTTAATCACCTACTCAACTCTGATCGGTGGTCTTTGTGCAAGTGGAAGACTTAATGAAGCCATTGAACTTTTCGAAAAAATGATCTCAGTAGAGAAAATTATTCCAGATGTGTTAACTTACAATGTTTTGATTAACGGGTTTTGTCGGAAAGGAAAAGTAGATCAGGCTAGAAAGATAATGGAGTACATGAAAAATACTGGATGCAATCCTAATATCTTCAATTATTCATCCTTAATGAATGGCCTTTGCAAGGAAGGAAGAATAGAGGATGCCAAAAAGCTTTTTAATGAAATGAAAAGCTTTGGTATGAAACCTGATACAGTGGGCTATACTACTTTAATCAATTCCCTCTGCAAGACTGGGGGGGTTAATGAAGCTATGGCATTGCTTCGAGAGATGAAAGAAAAAGAATGCAAAGCAGATACTGTGACCTTTAATGTAATACTTGGAGGACTGTGCGGAGAAGGAAGGTGTGCAGAGGCTCTTGACATGCTTGAGAATCTTCCTTATGAGGGTATTTATCTGGACAAAGCCAGTTACAGGATTGTGTTGAATTTCTTGACCGAAAAAGGAGAACTGAAAAAAGCCATTGAGCTGTTAAGTCTGATGCTATATAGGGGTTTTGTACCACATCATGGTACTTCAAATCAGTTGCTGATTAGGCTTTGTGAGGCCAAAATGGTTGAAGATGCAGCTTTGTCTCTGATAGAATTATTGCAAAAGGGTTTCAGACCAAACCTTGATTCTTGGTCTATTTTGGTTGATTTGATCTGCAGAGAAAGAAGACTCTTGCCTGCATTTGAACTGCTTGACAAGTTAGTCACTGTAGAGTCTTGA 1545 38.38 MNFVMVSRKCCFSTAALSTHTSSLSWNSFQFWKPTSPKPDPPAESSTTSASVQKKTRYISHENAIQLIKHERDPQHALEIFNMVSEQKGFNHNHATYATILHKLGRSKKFQAIDAVLHQMTYETCKFHEIIFLNLMKHFSKSSLHERVLDMFYAIQSIVRDKPSVKAISTCLNLLVESDKMDLARKLLLHSRKKLGLKPNTCIYNILVKHHCKKGDIKSAFEVMKEMEKTKISFPNLITYSTLIGGLCASGRLNEAIELFEKMISVEKIIPDVLTYNVLINGFCRKGKVDQARKIMEYMKNTGCNPNIFNYSSLMNGLCKEGRIEDAKKLFNEMKSFGMKPDTVGYTTLINSLCKTGGVNEAMALLREMKEKECKADTVTFNVILGGLCGEGRCAEALDMLENLPYEGIYLDKASYRIVLNFLTEKGELKKAIELLSLMLYRGFVPHHGTSNQLLIRLCEAKMVEDAALSLIELLQKGFRPNLDSWSILVDLICRERRLLPAFELLDKLVTVES 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3993029 3994573 - Bda016431.1 Bda03g00462 3721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00462 514 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 17 511 - -
Bda03g00462 514 SUPERFAMILY HCP-like 72 339 - -
Bda03g00462 514 TIGRFAM PPR: pentatricopeptide repeat domain 275 308 IPR002885 -
Bda03g00462 514 TIGRFAM PPR: pentatricopeptide repeat domain 346 377 IPR002885 -
Bda03g00462 514 TIGRFAM PPR: pentatricopeptide repeat domain 203 236 IPR002885 -
Bda03g00462 514 TIGRFAM PPR: pentatricopeptide repeat domain 311 343 IPR002885 -
Bda03g00462 514 TIGRFAM PPR: pentatricopeptide repeat domain 238 272 IPR002885 -
Bda03g00462 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Bda03g00462 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Bda03g00462 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Bda03g00462 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Bda03g00462 514 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 17 511 - -
Bda03g00462 514 MobiDBLite consensus disorder prediction 35 54 - -
Bda03g00462 514 Pfam PPR repeat family 271 320 IPR002885 -
Bda03g00462 514 Pfam PPR repeat family 341 389 IPR002885 -
Bda03g00462 514 Pfam PPR repeat family 199 248 IPR002885 -
Bda03g00462 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Bda03g00462 514 Pfam PPR repeat 415 444 IPR002885 -
Bda03g00462 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Bda03g00462 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 266 IPR002885 -
Bda03g00462 514 Gene3D Tetratricopeptide repeat domain 301 372 IPR011990 GO:0005515
Bda03g00462 514 Gene3D Tetratricopeptide repeat domain 373 440 IPR011990 GO:0005515
Bda03g00462 514 Gene3D Tetratricopeptide repeat domain 441 513 IPR011990 GO:0005515
Bda03g00462 514 Gene3D Tetratricopeptide repeat domain 232 300 IPR011990 GO:0005515
Bda03g00462 514 Gene3D Tetratricopeptide repeat domain 35 231 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00462 - - - qsu:112025145 735.332
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00462 Bda13g01364 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00462 Bda-Chr3:3993029 Bda01g00240 Bda-Chr1:26583469 5.33E-33 dispersed
Bda07g00223 Bda-Chr7:2581726 Bda03g00462 Bda-Chr3:3993029 8.82E-14 dispersed
Bda03g00462 Bda-Chr3:3993029 Bda09g00569 Bda-Chr9:7864417 2.42E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g220 . . . Bda03g00462 . . . . . Cmo12g00236 . . . Car12g00269 . Cpe07g00246 . Bhi04g01067 . . . . . Lcy13g1332 . . . . . . . . . . . . . . Cme03g01813 . Blo18g00052 . Bda13g01364 . . . . . . . . Cma12g00284 . . . . . . . . . . . . . . . . . . . . Chy03g01182 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011764 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00462 Bda_Chr03 FPKM 1.400844 0.0 0.0 0.0 0.0 0.84365 0.749197 1.23323 1.045128