Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00467 ATGGGTGGAGAGAAAATGGAACCGGAAGACATGTCGGAGGATGACGACGATCGATCAACGCCGTTGGATCTGGGAACGGACGCCATAACCGAATCGGCTAACAAAACGAGGAATTGCGCTGGATGCTTCTCTGGTGGTGTTGGTGGGTCTGGGTCTATGGAGAACGTCCTCGAGAATGTTCTGGAAAATGTTCTTAAGTTCCTCACCTCTTCCCGAGATAGGAACGCTGCCTCATTGGTCTGCAAGTCATGGTATCGAGTCGAGGCTTTCACTCGACTGCACCTTTCTATCGGAAACTGCTATGCTGTCTCCCCTCGCCGCGCCATCTCTCGGTTTAACCGGATAAGGTCTGTGGCTATCAAAGGTAAGCCTCGTTTCTCAGATTTCAATCTCATGCCGCCTGATTGGGGAGCCCAATTCGCTCCTTGGGTTGTGGCTATGGCCAAAGCTTATCCCTCACTCGAGAAGGTTTACCTGAAGCGCATGTCTATTACGGACTATGATCTGTTTCTCCTTTCCAAATCGTTTCCGGACTTCAAGGAGCTCGTCCTTGTTTGCTGCGAAGGGTTTGGCACCAGTGGTCTCGCCGTAATTGCTAGCCGGTGCAGGTACTGTTACCCATTTTCCTTCTTTAGTATCAATCTTAAAGGAAAATTCTCTAATACTTTCTGTCAACTTAGGCTGCTTGATTTGTTTTTCAGACAATTAAGAGTTCTTGATCTGGTTGAATCTGTCGTAGCGGATGATGACGTGGATTGGATATCTTGTTTTCCAGAAAGAGAAAGCCAAACTTGTCTAGAATCCTTGGTATTTGATTGTGTAGATTCTCCCATTAATTTTGAGGCATTGGAGAGGTTAGTGACGAGGTCGCCTTTGCTGAAGAAACTTAAGCTCAACCAACATGTTTCCATTGGTCAGCTACACCGCCTGATGATTAGATCCCCTCAGCTCACCCATATTGGAACTGGTGCATTTTCTACCCTGGAGGCAATGGGTCATGGCGATCAGGAGCCTGATTATGCGTCTGCCTTTGCTTCATGCAAATCATTAGTTTGTCTCTCTGGGTTTAAGGAAGTTTCACCCGATCACCTTCACGTCATCTACCCTGTTTGTGTGAATCTCACTTCTCTCAATTTCAGCTATGCAAGTGTTACTGCTGAACAACTTAAACCAGTTATAAGGCTCTGTCACAACCTTCAAATATTTTGGGCCCTTGATTCCATATGTGATGAAGGACTCCAGGCTGTGGCTGCAACTTGTAAAGAATTACGAGATCTTAGGATTTTCCCTTCTGATGCCCGAGAGGATGGTGATAGCTCTGTTTCTGAAGTGGGTTTTCAGGCAATATCTGAGGGCTGTAGAAAACTAGAGTCAATCTTATATTTCTGCCAAAGAATGACAAATGCAGCTGTTATAGAAATGTCGAAGAATTGCCAAAATCTTGTTGTATTTAGGCTTTGTATCATGGGTAGGCTCCGGCCTGACCATGTGACTAGAAAGCCCATGGATGAAGGGTTTGGAGCCATTGTTAAGAACTGTCAGAAGCTCACCCGCCTTGCTATATCTGGATTACTCACCGATCACGCTTTCAGTTACATTGGAACGTACGGGAAATTAATACGAACACTTTCAGTTGCTTTTGCTGGAGATAGCGATGTGGGGTTGAAATATATACTTGAGGGTTGTCCTAGACTGCAAAAACTTGAGATTAGAGATAGTCCATTTGGCGATGCAGCTTTGCTATCTGGTTTGCATCTCTATTACAACATGAGATTCCTCTGGATGTCATCGTGTAATTTAACACGACAGGGTTGTCGAGAGGTTGCTAGAGCGATGCCTCACTTGGTAGTGGAAGAAATCAGATACGAATCTGAGGAAATGAGGAATCACATTGACATTTTATATATGTATCGTTCTCTCGAGGGCCCAAGAAACGATGTTCCAACATTTGTCAACATCTTGTAG 1965 44.99 MGGEKMEPEDMSEDDDDRSTPLDLGTDAITESANKTRNCAGCFSGGVGGSGSMENVLENVLENVLKFLTSSRDRNAASLVCKSWYRVEAFTRLHLSIGNCYAVSPRRAISRFNRIRSVAIKGKPRFSDFNLMPPDWGAQFAPWVVAMAKAYPSLEKVYLKRMSITDYDLFLLSKSFPDFKELVLVCCEGFGTSGLAVIASRCRYCYPFSFFSINLKGKFSNTFCQLRLLDLFFRQLRVLDLVESVVADDDVDWISCFPERESQTCLESLVFDCVDSPINFEALERLVTRSPLLKKLKLNQHVSIGQLHRLMIRSPQLTHIGTGAFSTLEAMGHGDQEPDYASAFASCKSLVCLSGFKEVSPDHLHVIYPVCVNLTSLNFSYASVTAEQLKPVIRLCHNLQIFWALDSICDEGLQAVAATCKELRDLRIFPSDAREDGDSSVSEVGFQAISEGCRKLESILYFCQRMTNAAVIEMSKNCQNLVVFRLCIMGRLRPDHVTRKPMDEGFGAIVKNCQKLTRLAISGLLTDHAFSYIGTYGKLIRTLSVAFAGDSDVGLKYILEGCPRLQKLEIRDSPFGDAALLSGLHLYYNMRFLWMSSCNLTRQGCREVARAMPHLVVEEIRYESEEMRNHIDILYMYRSLEGPRNDVPTFVNIL 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4026502 4028864 + Bda016437.1 Bda03g00467 3726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00467 654 MobiDBLite consensus disorder prediction 1 25 - -
Bda03g00467 654 Gene3D - 50 92 - -
Bda03g00467 654 SUPERFAMILY F-box domain 56 87 IPR036047 GO:0005515
Bda03g00467 654 Pfam Transport inhibitor response 1 protein domain 114 159 IPR041101 -
Bda03g00467 654 PANTHER F-BOX PROTEIN FBX14 48 653 - -
Bda03g00467 654 Pfam F-box 54 94 IPR041567 -
Bda03g00467 654 SMART LRR_CC_2 151 175 IPR006553 -
Bda03g00467 654 SMART LRR_CC_2 513 536 IPR006553 -
Bda03g00467 654 SMART LRR_CC_2 562 586 IPR006553 -
Bda03g00467 654 SMART LRR_CC_2 176 201 IPR006553 -
Bda03g00467 654 SMART LRR_CC_2 453 477 IPR006553 -
Bda03g00467 654 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 48 653 - -
Bda03g00467 654 Gene3D Ribonuclease Inhibitor 93 654 IPR032675 -
Bda03g00467 654 SUPERFAMILY RNI-like 83 616 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00467 - - - csv:101207073 914.835
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00467 Bda13g01371 CCT
Bda03g00467 Bda11g00786 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00467 Bda-Chr3:4026502 Bda13g01378 Bda-Chr13:36380927 0 dispersed
Bda11g00786 Bda-Chr11:7853392 Bda03g00467 Bda-Chr3:4026502 0 wgd
Bda13g01371 Bda-Chr13:36311011 Bda03g00467 Bda-Chr3:4026502 0 wgd
Bda03g00467 Bda-Chr3:4026502 Bda03g00474 Bda-Chr3:4081549 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g477 . Blo12g00720 . Bda03g00467 Bpe02g00131 Bpe04g00428 Bma04g00441 Bma01g02595 . . Cma01g01635 Cma09g00584 . . . Cpe06g00446 . . . . . . . . . . . . . . . Cone4ag1311 Cone7ag1254 . . Lsi04g02267 Csa03g04477 Chy04g00224 . Blo17g00104 . Bda11g00786 Bda13g01371 . Bpe14g00475 . Bma02g00121 Sed05g1571 Cmo01g01680 Cmo09g00571 . . . Car09g00514 . . Bhi09g02480 Tan01g3834 Cmetu04g2278 . Hepe01g2158 Mch11g0695 . Cla11g01410 Cam11g1467 Cec11g1495 Cco11g1491 Clacu11g1628 Cmu11g1445 Cre11g1864 . . . Cme04g00250
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001591 5 2 2 4 3 0 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 1 2 2 2 2 2 5 2 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00467 Bda_Chr03 FPKM 1.059259 0.0 14.10594 15.918149 10.936383 11.766265 11.789199 29.704527 27.250395