Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00468 ATGGCGGCGAATTCGCACAGAGGCGGCAGTTCTTTTTACAACAACGGTGCTGCTCCTTATCGGTCAAGGGACGGACTTAGCTCCAGACCTACATCTTCTTCTGACGAAATCCAATTGCAGATAGATCCAATGCAGATGGACTTCGATGACGAGATTACAGGTCTCCGTACCCAAGTTAAAAGACTGAGAAACATTGCTGGAGAGATTGGGTCGGAAGCAAAGTTTCAGAATGATTTTCTTAATCAATTGCAAATGACTCTGATCAAAGCTCAAGCCGGGGTAAAGAACAATGTAAGAAAATTGAACAAGAGCATCATCAGAAACGGTTCAAACCATGTTGTTCACGTAGTTCTTTTTGCACTCCTCTGTTTCTTCATCGTTTACCTTTGGTCCAAAACGTACAGAAAATGA 411 42.82 MAANSHRGGSSFYNNGAAPYRSRDGLSSRPTSSSDEIQLQIDPMQMDFDDEITGLRTQVKRLRNIAGEIGSEAKFQNDFLNQLQMTLIKAQAGVKNNVRKLNKSIIRNGSNHVVHVVLFALLCFFIVYLWSKTYRK 136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4037121 4038791 + Bda016438.2 Bda03g00468 3727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00468 136 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 9 135 - -
Bda03g00468 136 SUPERFAMILY SNARE fusion complex 37 103 - -
Bda03g00468 136 MobiDBLite consensus disorder prediction 1 35 - -
Bda03g00468 136 MobiDBLite consensus disorder prediction 1 17 - -
Bda03g00468 136 Gene3D - 44 104 - -
Bda03g00468 136 PANTHER GOLGI SNARE BET1-RELATED 9 135 IPR039897 GO:0015031|GO:0030173
Bda03g00468 136 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 42 104 IPR000727 -
Bda03g00468 136 CDD SNARE_Qc 49 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00468 K08505 SFT1; protein transport protein SFT1 - cpap:110816711 218.779
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g01376 Bda-Chr13:36374069 Bda03g00468 Bda-Chr3:4037121 4.04E-51 wgd
Bda03g00468 Bda-Chr3:4037121 Bda03g00475 Bda-Chr3:4098831 5.36E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g474 . Blo12g00718 . Bda03g00468 . Bpe04g00430 Bma04g00443 . . . Cma01g01632 Cma09g00582 Car01g01240 . . Cpe06g00445 . . . . . . . . . . . . . . . Cone4ag1313 Cone7ag1256 . . . . . . . Blo18g00115 . . . Bpe14g00473 Bma01g01393 Bma02g00123 Sed05g1573 . Cmo09g00569 . . . Car09g00513 . . Bhi09g02476 Tan01g3827 Cmetu04g2784 . Hepe01g2156 Mch11g0693 . Cla11g01408 Cam11g1465 Cec11g1493 Cco11g1489 Clacu11g1626 Cmu11g1443 Cre11g1862 . . . Cme04g00253
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003483 3 1 2 4 2 0 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 2 1 1 2 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00468 Bda_Chr03 FPKM 12.184482 13.352221 9.292045 10.583555 16.468197 13.533396 16.79073 8.471581 9.360113