Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00481 TCGAAGATTCTTGGGAGATTCAATCGTGCTCGTGCAGCACAGCTCACACTCCCTCACTTCGTATGCCAGACGCCACTTTTCATGCCAGTGGGGACACAAGGGACCATAAAAGGTTTGACAACTAGCCAACTTGAGGAAATTGGCTGCCAAATCATACTTGGAAACACATACCATTTGGCTCTTCGTCCTACGTCAGAGCTTATTGATGAGTTGGGAGGTCTCCACAAGTTCATGAACTGGCCTAGAGCACTGCTTACTGACTCTGGTGGCTTTCAAATGGTTGTATCTTTACTGCATTTAGCAGACATCACTGAAAAAGGTGTAACATTTCAGTCGCCCATTGATGGAAAGCCAATGCTTCTGACGCCAGAGGAGTCGATACAAATCCAAAATAGAATTGGAGCTGATATTATTATGGCTCTTGATGATGTAGTTAGAACCACAATTACTGGTCCAAGAGTTGAGGAAGCCATGTATCGCACTCTTCGATGGATAGATAGATGTATAGCTGCTCATGAGAGACCTAATGAGCAGAATTTATTTGGTATTGTACAAGGTGGTTTAGATCCTGTGTTAAGGGACATATGTGTTAGAGGCCTGGTAGAACGGAAATTACCTGGCTATGCTATTGGTGGTCTTTCAGGAGGTGAAGACAAAGATTCATTTTGGCGCGTTGTTGCTCAGTGCACGGCTTCATTGCCTGAGGATAAACCTCGATATGTTATGGGTGTTGGTTATCCTCTAGATATTGTGGTTTGCAGTGCCTTGGGTGCCGACATGTATGACTGCGTTTATCCTACTCGCACTGCCCGGTTTGGCACGGCTCTTATTCCAGAGGGAGTGCTTAAACTAAAGCATAATGCCATGGCTGATGACACTCGTCCTATTGATCCTTCATGCACTTGTTTGGTTTGCAAGAACTATACAAGAGCCTATATTCATTGCCTCGTTACCAAAGATGCCATGGGATCTCAGCTTCTATCCTATCATAATTTGCACTACATGTTGAAGCTTAGTAGAGATCTGCATTTCTCAATCGTCCAAGGAAAATTTCCAGAGTTCGTGTGCAACTTTCTGCAAAAGATGTTCCCAGAAGGTGATGTTCCTGAATGGGTCTGTAATGCCATGGAAGTTGCTGGAATTGATATTTCTTCTTGCTGCTCTCCGTTCAAGACTAGGTATAACAAACACACTTCAAACTAG 1203 43.89 SKILGRFNRARAAQLTLPHFVCQTPLFMPVGTQGTIKGLTTSQLEEIGCQIILGNTYHLALRPTSELIDELGGLHKFMNWPRALLTDSGGFQMVVSLLHLADITEKGVTFQSPIDGKPMLLTPEESIQIQNRIGADIIMALDDVVRTTITGPRVEEAMYRTLRWIDRCIAAHERPNEQNLFGIVQGGLDPVLRDICVRGLVERKLPGYAIGGLSGGEDKDSFWRVVAQCTASLPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALIPEGVLKLKHNAMADDTRPIDPSCTCLVCKNYTRAYIHCLVTKDAMGSQLLSYHNLHYMLKLSRDLHFSIVQGKFPEFVCNFLQKMFPEGDVPEWVCNAMEVAGIDISSCCSPFKTRYNKHTSN 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4146308 4151806 + Bda016451.1 Bda03g00481 3740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00481 400 Pfam Queuine tRNA-ribosyltransferase 9 362 IPR002616 GO:0006400|GO:0016763
Bda03g00481 400 TIGRFAM Q_tRNA_tgt: tRNA-guanine transglycosylase 6 362 IPR004803 GO:0008479|GO:0101030
Bda03g00481 400 Gene3D - 2 364 IPR036511 GO:0006400|GO:0016763
Bda03g00481 400 PANTHER QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 3 386 - -
Bda03g00481 400 TIGRFAM tgt_general: tRNA-guanine family transglycosylase 6 362 IPR002616 GO:0006400|GO:0016763
Bda03g00481 400 Hamap Queuine tRNA-ribosyltransferase [tgt]. 3 361 IPR004803 GO:0008479|GO:0101030
Bda03g00481 400 SUPERFAMILY tRNA-guanine transglycosylase 3 361 IPR036511 GO:0006400|GO:0016763
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00481 K00777 QTRT1; queuine tRNA-ribosyltransferase catalytic subunit [EC:2.4.2.64] - csin:114287940 764.222
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01336 Bda03g00481 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01266 Bda-Chr4:63191323 Bda03g00481 Bda-Chr3:4146308 8.11E-104 transposed
Bda01g01369 Bda-Chr1:49565629 Bda03g00481 Bda-Chr3:4146308 3.03E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g450 . Blo12g00713 . Bda03g00481 . Bpe04g00435 Bma04g00448 . . . . Cma09g00573 . . . Cpe06g00437 . . . . . . . . . . . . . . . Cone4ag1321 . . . Lsi04g02253 Csa03g04464 Chy04g00237 . . . . Bda01g01336 . . . . Sed14g0067 . Cmo09g00560 . . . Car09g00502 . . Bhi09g02464 Tan01g3814 Cmetu04g2961 . Hepe01g2146 Mch11g0684 . Cla11g01400 Cam11g1456 . . Clacu11g1617 Cmu11g1434 . . . . Cme04g00265
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005915 1 2 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 6 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00481 Bda_Chr03 FPKM 28.253731 32.547623 13.88079 17.409187 0.635164 0.0 0.545171 11.519254 11.668484