Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00487 ATGGCTCTCAATAGCAGTTCTGTGATTCGTTGCGAGTCTTTTGTTTCGAGACAACCCCTCTTACCTTCTTCCAATCCTCATCAACCTTCTTTCTGCACTAGCCAACGAAGACCGAGACCCGTTAGGCCCATATCTGCAAACGCCGCTGATTCTGCGCAGAACCCTGTTGTTTCTGATCCGCCTGCGAAGAAGCAACCATCTTCGACGGCGACGGCGGCGGCGACTTTGAAAACGACCCTGAATGCGGTTTCTGGAAAGTGGACCATAGAAAGCTGGAAATCAAAGAAGGCACTGCAGTTACCTGAATACCCGGATCTGGAAGAACTCGAATCTGTGTTGCGGACTTTGGATGCGTTTCCGCCGATCGTCTTCGCCGGTGAGGCTAGGAGCTTGGAGGAACGTCTAGGAGAGGCTGCCATGGGAAATGCTTTCCTCTTACAAGGTGGAGATTGCGCTGAGAGTTTCAAGGAGTTTAATGCGAACAACATCCGTGATACTTTCAGAGTTATTCTGCAAATGGGTGCGGTTCTAATGTTCGGAGGCCAAATGCCCGTAATCAAGGTAGGAAGAATGGCGGGTCAGTTTGCTAAACCCAGGTCGGATTCATTTGAGGAGAAAAGCGGCGTAAAGTTGCCAAGTTACAGAGGAGATAATGTTAATGGAGATTCATTTGACGAAAAGTCGAGAATTCCTGATCCTCAGAGGATGATCAGGGCGTACTGTCAATCTGCGGCGACTCTGAATCTTCTCCGCGCTTTTGCTACCGGTGGTTACGCTGCTATGCAAAGAATTACCCAGTGGAATTTGGATTTCGCAGAGCATAGCGAACAGGGGGACAGGTACCGTGAACTAGCTCATCGTGTTGATGAGGCTCTCGGATTTATGGCTGCAGCTGGACTCACAGTTGATCATCCTATTATGACAACCACCGACTTTTGGACCTCTCATGAGTGCTTGCTCTTACCATATGAGCAGTCACTCACGAGGCTGGACTCTACCTCCGGCCTCTACTATGACTGCTCTGCCCACATGCTCTGGGTCGGAGAGCGCACCAGGCAGCTCGATGGTGCTCATGTAGAGTTCTTGAGGGGCGTTGCCAATCCCCTTGGCATCAAGGTGAGCGATAAGATGGATCCAAATGAACTAGTGAAACTCATTGAGATCTTGAATCCGCAAAACAAACCTGGAAGAATTACAGTGATTACTAGGATGGGAGCGGAGAATATGAGAGTGAAACTCCCCCATCTTATTAGAGCAGTTCGCAGGGCAGGCCAGATTGTTACATGGGTCAGTGATCCTATGCATGGCAACACCATTAAGGCTCCTTGCGGCCTGAAAACTCGCCCCTTCGATGCAATCAGGGCTGAGGTGAGGGCGTTCTTTGATGTGCATGAGCAAGAAGGAAGCAACCCAGGTGGAGTCCATTTGGAGATGACCGGCCAGAACGTGACGGAGTGCATCGGTGGATCAAGAACGGTGACGTTTGATGATTTGAGCTCCCGCTACCACACCCACTGCGACCCGCGCCTTAATGCTTCTCAATCGCTCGAGCTGGCCTTCATCATTGCCGAGCGGCTGAGAAAGAGAAGGATCGGATCTCAAGCTCCCCTCCCAGGCATCGGCTTTTAG 1629 50.83 MALNSSSVIRCESFVSRQPLLPSSNPHQPSFCTSQRRPRPVRPISANAADSAQNPVVSDPPAKKQPSSTATAAATLKTTLNAVSGKWTIESWKSKKALQLPEYPDLEELESVLRTLDAFPPIVFAGEARSLEERLGEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVILQMGAVLMFGGQMPVIKVGRMAGQFAKPRSDSFEEKSGVKLPSYRGDNVNGDSFDEKSRIPDPQRMIRAYCQSAATLNLLRAFATGGYAAMQRITQWNLDFAEHSEQGDRYRELAHRVDEALGFMAAAGLTVDHPIMTTTDFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITVITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHEQEGSNPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRIGSQAPLPGIGF 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4168581 4171848 - Bda016456.3 Bda03g00487 3746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00487 542 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 1 535 IPR002480 GO:0003849|GO:0009073
Bda03g00487 542 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1 535 - -
Bda03g00487 542 TIGRFAM DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 87 530 IPR002480 GO:0003849|GO:0009073
Bda03g00487 542 MobiDBLite consensus disorder prediction 18 35 - -
Bda03g00487 542 Pfam Class-II DAHP synthetase family 87 523 IPR002480 GO:0003849|GO:0009073
Bda03g00487 542 MobiDBLite consensus disorder prediction 18 69 - -
Bda03g00487 542 Gene3D Aldolase class I 271 528 IPR013785 -
Bda03g00487 542 SUPERFAMILY Aldolase 82 527 - -
Bda03g00487 542 MobiDBLite consensus disorder prediction 47 69 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00487 K01626 E2.5.1.54, aroF, aroG, aroH; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] - twl:120010841 933.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00487 Bda11g00773 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00610 Bda-Chr8:6207366 Bda03g00487 Bda-Chr3:4168581 0 transposed
Bda13g00965 Bda-Chr13:11275952 Bda03g00487 Bda-Chr3:4168581 0 transposed
Bda14g01583 Bda-Chr14:33897729 Bda03g00487 Bda-Chr3:4168581 0 transposed
Bda11g00773 Bda-Chr11:7773415 Bda03g00487 Bda-Chr3:4168581 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g436 . Blo12g00710 . Bda03g00487 Bpe02g00116 Bpe04g00441 . Bma01g02607 . Cmo12g00127 . . . Car12g00152 Sed14g1024 . Cpe07g00140 Bhi04g00773 Tan02g2405 Cmetu03g1046 . Hepe10g0485 . Lcy13g1551 Cla08g01120 Cam08g1576 Cec08g1146 Cco08g1273 Clacu08g1277 . Cre08g1058 Cone4ag1327 Cone7ag1268 . . . . . Cme03g01855 . . Bda11g00773 . . . . . . . . Cma12g00165 . . . . . . . . . . . . . . . . . . . Lsi08g00976 Csa02g02160 Chy03g01357 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000443 4 4 4 4 4 4 5 4 4 4 4 3 5 4 3 4 4 5 5 4 4 3 4 4 3 4 3 5 4 1 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00487 Bda_Chr03 FPKM 19.394737 17.53437 23.463091 21.778913 11.828309 10.40804 11.637045 16.839638 18.153708