Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00489 ATGTCCCGATCTATGTACAGAGGTTTATCTGGAGTAAAAATCTATGGAAGCAGTGACGATTTATGGGACTCCCAGACGAAAGATAAAGCGGAAAAGGAAGATGTGAATAGACGAGGCTCTTCAAATCAAAGTAATTCAGCCCCAAAAGTTCCATTTCGGTTGCTTTACGCAGATAATTCTCCTTCCAAATATAGTGGCTCTGAAAATGGCTTTCCGTCTGATCCTTCAATTTTTGGAAACCCAAGAAGCCGGCGCAAAATAATTCTGCAACTTTTGAATTTCAGTTTACTGTTAATGATTATTCTTGCTCTTGCTTGTTCTCTTTGGTGGACAATGTCCATTTCGGCCTCATCTAGAGCTTACATATTTCGTGGCTATAGGCGACTTCAAGAGCAGCTTGTATCCGACTTTTGGGATATTGGAGAGATTTCTCTTGGTTCGTCAAGGTTAACAGAATTGGAATTCTGTTCTGAAGAGTTTGAAAATCATGTACCATGCTTCAATTCTTCAGAGAATTTAACTTTGGATAATTCGGGGGGTGATAATTACGATAGGGATTGTGGGTTTGGGTCAAGGCAAGATTGCATTGTTCTCCCTCCTGTGAAGTACAAAATTCCTCTTAGATGGCCCACTGGAAGAGATGTCATCTGGTTTTCAAATGTGAAAATATCTGCGAAGGAGGTACTTTCCTCTGGAAGTTTGACTAAGAGGATGATGATGTTAGAGGAAGAGCAAATTTCCTTCCGTTCAGCATCTCTTACGTTCGACAGTGTGGAAGATTATTCTCATCAAATTGCTGAAATGATCGGGCTGAGGAATGAATCTAACTTCATTGAAGCTGGTATTAGAACTGTTCTGGATATCGGATGTGGTTATGGAAGCTTTGGAGCACATCTTTTTTCCAAACAACTCTTGACTCTGTGCATAGCAAGCTATGAGGCTTCGGGAAGTCAAGTACAACTGACTCTTGAAAGGGGTCTTCCTGCTATGATTGGTTCTTTTACATCAAAACAGTTGCCGTATCCATCTCTGTCCTTTGATATGGTTCATTGTGCTCGATGTGGTGTTGATTGGGACGAAAAAGATGGTAATTACTTGATTGAAGTTGATAGAGTTCTAAAGCCAGGTGGGTATTTTGTCTGGACTTCACCCCTTACCAATGTTCAAGGTTCTCTTCAAAACAAAGGGAATCAGAAAAAATGGAACTTCATTTGTGATTTTGTTGAATATCTCTGCTGGGAGATGTTATCACAACAAGACGAAACTGTTGTTTGGAAAAAGACTAGTAAAAGCAATTGCTTTAGCAAAAGGAAGCCCGACTCGAGTCCTCCTATTTGCGGAAAAGGCCATGATGTTGAATCTCCTTACTATCGACCACTCCAAACCTGCATCGGTGGAAGAAAGAGCCGCAGATGGGTTCCAATAGAAGCCAGAAGAACTTGGCCTTCTAGAGCTAACATGAACAAAAGTGAACTTGCGATATATGGTTTGCACACCGAAGATTTTGATGAGGATTTGCTGCACCGGAAAATGGCTGTGCAAAATTACTGGTCTCTTTTGTCACCATTAATATTTTCGGACCATCCAAAAAGGCCTGGTGATGAAGATCCATCGCCACCCTTCAACATGCTTCGAAATGTTCTGGACACGAATGCTCATTTTGGTGGTTTCAATTCTGCATTGTTGGAAGCTAGGAAGTCTGTATGGGTCATGAATGTGGTCCCTATAGATGGACCCAACCTCCTTCCGACGATCCTTGACAGGGGCTTCGTCGGTGTATTGCACGATTGGTGTGAGGCTTTCCCAACATACCCGAGGACTTATGATCTGGTGCATGCAGATGGTCTGCTATCTCTTGAAACCAATACAAAGCCAAGGTGCACCATGCTTGATATTTTTATAGAGATCGACCGGTTACTTCGTCCAGAGGGTTGGATTATAATCCGGGATACAGCTCCTCTCGTTGAATCGGCAAGAGGGCTGACAGCACAGCTGAAATGGGATGCACGAGTCGTAGAGATCGAAAATAGCAACGAGGAGAAGCTCCTCATCTGCCAGAAGCCTTCGATTAAGAGGCAAACCAGGTAG 2088 42.67 MSRSMYRGLSGVKIYGSSDDLWDSQTKDKAEKEDVNRRGSSNQSNSAPKVPFRLLYADNSPSKYSGSENGFPSDPSIFGNPRSRRKIILQLLNFSLLLMIILALACSLWWTMSISASSRAYIFRGYRRLQEQLVSDFWDIGEISLGSSRLTELEFCSEEFENHVPCFNSSENLTLDNSGGDNYDRDCGFGSRQDCIVLPPVKYKIPLRWPTGRDVIWFSNVKISAKEVLSSGSLTKRMMMLEEEQISFRSASLTFDSVEDYSHQIAEMIGLRNESNFIEAGIRTVLDIGCGYGSFGAHLFSKQLLTLCIASYEASGSQVQLTLERGLPAMIGSFTSKQLPYPSLSFDMVHCARCGVDWDEKDGNYLIEVDRVLKPGGYFVWTSPLTNVQGSLQNKGNQKKWNFICDFVEYLCWEMLSQQDETVVWKKTSKSNCFSKRKPDSSPPICGKGHDVESPYYRPLQTCIGGRKSRRWVPIEARRTWPSRANMNKSELAIYGLHTEDFDEDLLHRKMAVQNYWSLLSPLIFSDHPKRPGDEDPSPPFNMLRNVLDTNAHFGGFNSALLEARKSVWVMNVVPIDGPNLLPTILDRGFVGVLHDWCEAFPTYPRTYDLVHADGLLSLETNTKPRCTMLDIFIEIDRLLRPEGWIIIRDTAPLVESARGLTAQLKWDARVVEIENSNEEKLLICQKPSIKRQTR 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4188966 4192470 + Bda016458.1 Bda03g00489 3748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00489 695 MobiDBLite consensus disorder prediction 22 38 - -
Bda03g00489 695 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 201 387 IPR029063 -
Bda03g00489 695 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 44 692 IPR004159 GO:0008168
Bda03g00489 695 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 545 654 IPR029063 -
Bda03g00489 695 Gene3D Vaccinia Virus protein VP39 241 423 IPR029063 -
Bda03g00489 695 MobiDBLite consensus disorder prediction 1 49 - -
Bda03g00489 695 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 162 687 IPR004159 GO:0008168
Bda03g00489 695 PANTHER PECTIN METHYLTRANSFERASE QUA2-RELATED 44 692 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00489 K23870 QUA2, TSD2; putative pectin methyltransferase [EC:2.1.1.-] - csv:101212448 1104.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00489 Bda13g01399 CCT
Bda03g00489 Bda11g00768 CCT
Bda01g00888 Bda03g00489 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02130 Bda-Chr1:57297671 Bda03g00489 Bda-Chr3:4188966 0 dispersed
Bda03g00489 Bda-Chr3:4188966 Bda11g01181 Bda-Chr11:12193721 0 dispersed
Bda01g00888 Bda-Chr1:41866787 Bda03g00489 Bda-Chr3:4188966 0 wgd
Bda11g00768 Bda-Chr11:7743323 Bda03g00489 Bda-Chr3:4188966 0 wgd
Bda13g01399 Bda-Chr13:36679089 Bda03g00489 Bda-Chr3:4188966 5.10E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g417 . Blo12g00708 Bda01g00888 Bda03g00489 Bpe02g00111 Bpe04g00443 . Bma01g02610 Cmo05g00528 . Cma01g01610 Cma09g00561 Car01g01228 . . Cpe06g00427 . . . . . . . . . . . . . . . Cone4ag1332 Cone7ag1597 Cone17ag1213 Cone20ag0512 Lsi04g02238 Csa03g04449 Chy04g00251 . Blo17g00117 Blo18g00131 Bda11g00768 Bda13g01399 Bpe02g01124 Bpe14g00456 Bma01g01401 Bma02g00139 Sed14g0863 Cmo01g01656 Cmo09g00551 . . Car05g00451 Car09g00492 Cpe11g00441 Cpe02g00370 Bhi09g02441 Tan01g3792 Cmetu02g0320 . Hepe01g2131 . . Cla11g01386 Cam11g1443 Cec11g1469 Cco11g1465 Clacu11g1600 Cmu11g1419 Cre11g1839 Lsi08g00889 . . Cme04g00281
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002427 4 2 2 4 4 0 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 1 1 2 4 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00489 Bda_Chr03 FPKM 21.556623 23.190203 47.385849 49.29697 60.844738 58.901363 60.414055 39.4977 38.326283