Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00490 ATGTCAGGTGGTGGCTGTAGCATAGTATGGTTCAGAAGAGATCTCAGGATAGAAGATAACCCAGCTTTGGCTGCCGGAGTTCGAGCCGGCGCTGTAGTCGCAGTCTTCATCTGGGCGCCGGAAGAAGAAGGTCACTATAATCTGGGTAGGGTGTCAAGATGGTGGCTCAAACAGAGTTTGGCTCAGCTCGATTTCTCTCTCAGAAGTCTCGGCGCTAATCTCGTCACTAAAAGGTCGTCTGATAGTGTAACTGCTTTGCTCGAGGTCGTCAAATCTACCGGCGCAACTCAGCTCTTCTTCAACCATTTATACGATCCCTTGTCACTGATTAGGGATCACAGGGCAAAGGGGGTTTTATCAGCCCAGGGCATAGCCGTCAGATCATTCAATGCAGATTTACTGTATGAACCGTGGGATGTGAACGATGCCAGTGGCCATCCTTTCTCTACCTTTGCTTCTTTCTGGGAAAGATGTCTCAGCATGCCTTTCGATCCAGAGGCGCCACTTCTTCCTCCTAAAAGAATAATTCCAGGTGATATCTCGAGATGTCCTTCTGATACACTCGTGTTTGAAGATGAATCCGAGAAGGGTAGCAATGCCCTTCTTGCTCGAGCATGGTCTCCAGGCTGGAGCAATGCCGATAAGGCTCTAACCACATTCATAAACGGGCCTTTAATTGAGTATTCCAAAAATCGAAGAAAAGCCGATAGTGCCACCACCTCATTTCTCTCTCCCCACTTACATTTTGGGGAGGTGAGCGTGAGAAAAGTCTTCCATCTCGTTCGAATCAAGCAGGTTCTGTGGGCAAATGAAGGGAACAAAGCAGGCGTGGAGAGTGTCAACTTATTTCTCAAGTCGATCGGATTAAGGGAGTATTCTAGATACATAAGCTTTAACCATCCATACAGCCATGAAAGACCTCTACTTGGGCATCTTAAGTTTTTCCCATGGGTCGTAAATGAAGGGTATTTCAAAGCATGGAGACAAGGTCGAACTGGTTACCCGCTGGTCGATGCTGGGATGAGAGAGCTGTGGGCGACTGGCTGGCTACATGATAGAATAAGAGTTGTTGTTTCTAGCTTCTTTGTGAAGGTTTTGCAGCTTCCGTGGAGATGGGGGATGAAGTATTTTTGGGATACTCTCTTGGATGCCGATTTAGAGAGTGATGCTCTTGGTTGGCAGTATATTTCAGGCACTCTCCCTGATGGCCGAGAACTCGACCGTATCGATAATCCACAGTTGCAAATGACAAAGTTCTGGGGGTCTCCAAAGCTTAAGCGCTCATGCTCTAACTTCGAAACAAGAGACATGCTTAGAAATATGGCTCCTGATCTCCCACTTTCTTCGAAGTCTTTTGAAGAACTACAACAAACAGCCAACGGAGTGAAAAGGTATGTTGATCTTGGTAGTCCGGGTTCGATAATGATGCACCACAGTGCTTATAGGGTAATGCTGAAGCAGCATTCTTCGAGTCAAATTCTCCCTTCCAGAAGTAGAAGATTGTGGTGGAAGTTATTCCTTTGGAGCCACAGAAACCTGCATAAAACACAGACAATAGAAACACAGCCACCACCCATGAAGGTATCTTCCAACCAGCAAGGTGGGTATTGTTCAGATACACTAGAACCAAAACACAGTACAGAAATAAACAAGATAGGATCGCCCGGCACATTTACTGAAGACTTGTGCCAGAACAAGAACAAAAGTGATGATCCGATCAGAAACAGTTTTCATGGCGGAGAATCAGGTTTTTGGCCCCAAAATCAATGGTTTGCTTTTTCAACAGAATCATCATCCTTACAAAGAGTAAATGAATGGGTGAAAGATCTTCAAACCAAACCTCACCTATCAGTTGACAATGACAATATCGATAAGGATAACATCTCTTCAGCATCACCTCAGATTGGAAGATCACCAGAGAGAAGCCTTACACCTTTGAGTAGGCATCCCGATCCAGATACCAATCAGTCGGAAGAGATTTTGTACGCAAATAATGTCGTCCAATCCCTGAACACTTCATCAACTGTGGCTAATATCTCTGGAATTGATCTAAGGGCTATACCCATAATCTCACACTTCTCAAGTCTTCGATCTGTCAACTTATCAAGCAATTTCATATTTCACATTCCACCAGGATCATTACCTAAAGGTTTGCATGCCCTCAACTTGGCCAGGAACAAGATCAATACCACCGAAGGGCTCAGAGAATTAACCAGACTAAGGATACTTGACCTGAGTTACAATCGCATTTCTTTGTCAAACTGTACTGTGATCAAGGAGCTCTATCTCGCTGCAAACAAGATTAGTGAAGTTGAAGGGCTGCATAGACTCCTGAAGCTGACAGTTTTGGACCTGAGCTTCAACAAAATTACTACAACCAAAGCTTTAGGCCAGCTTGTTGCAAACTACAACTCGTTGCTAGGTCTTAATATATTGGGTAATCCAATCCAAAACAATGTTAGTGATGAGCAGTTGCGGAAGTCAATGTGTGGACTCCTTCCCAATTTAGTCTACTTGAACAAGCAGCCAACCAAAGCGCAGAGAGCACGAGAAGTGCGGACCAATAGTGCTGCCAAAGCTGCGCTAGGAAATGCTGGTAGGAGTTCTCGCAGAAAATCATCCAAAAAAGTGAGCCAACGTGGATCATGTTTAACTAGTGGGCAAAGAGGTAATACCAGAAGGTCAAACACAAGTCAAAAGGGCAGACTCATCCCCTTTTCAGCGTGA 2727 44.96 MSGGGCSIVWFRRDLRIEDNPALAAGVRAGAVVAVFIWAPEEEGHYNLGRVSRWWLKQSLAQLDFSLRSLGANLVTKRSSDSVTALLEVVKSTGATQLFFNHLYDPLSLIRDHRAKGVLSAQGIAVRSFNADLLYEPWDVNDASGHPFSTFASFWERCLSMPFDPEAPLLPPKRIIPGDISRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGVESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQLQMTKFWGSPKLKRSCSNFETRDMLRNMAPDLPLSSKSFEELQQTANGVKRYVDLGSPGSIMMHHSAYRVMLKQHSSSQILPSRSRRLWWKLFLWSHRNLHKTQTIETQPPPMKVSSNQQGGYCSDTLEPKHSTEINKIGSPGTFTEDLCQNKNKSDDPIRNSFHGGESGFWPQNQWFAFSTESSSLQRVNEWVKDLQTKPHLSVDNDNIDKDNISSASPQIGRSPERSLTPLSRHPDPDTNQSEEILYANNVVQSLNTSSTVANISGIDLRAIPIISHFSSLRSVNLSSNFIFHIPPGSLPKGLHALNLARNKINTTEGLRELTRLRILDLSYNRISLSNCTVIKELYLAANKISEVEGLHRLLKLTVLDLSFNKITTTKALGQLVANYNSLLGLNILGNPIQNNVSDEQLRKSMCGLLPNLVYLNKQPTKAQRAREVRTNSAAKAALGNAGRSSRRKSSKKVSQRGSCLTSGQRGNTRRSNTSQKGRLIPFSA 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4196127 4205074 - Bda016459.2 Bda03g00490 3749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00490 908 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Bda03g00490 908 Gene3D HUPs 8 206 IPR014729 -
Bda03g00490 908 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Bda03g00490 908 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 419 IPR036134 -
Bda03g00490 908 MobiDBLite consensus disorder prediction 849 908 - -
Bda03g00490 908 MobiDBLite consensus disorder prediction 623 641 - -
Bda03g00490 908 MobiDBLite consensus disorder prediction 878 908 - -
Bda03g00490 908 Pfam Leucine rich repeat 695 750 IPR001611 GO:0005515
Bda03g00490 908 Gene3D Ribonuclease Inhibitor 755 849 IPR032675 -
Bda03g00490 908 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 430 - -
Bda03g00490 908 MobiDBLite consensus disorder prediction 616 656 - -
Bda03g00490 908 PANTHER CRYPTOCHROME-1 1 419 - -
Bda03g00490 908 Pfam DNA photolyase 7 160 IPR006050 -
Bda03g00490 908 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Bda03g00490 908 PRINTS DNA photolyase signature 143 159 IPR002081 -
Bda03g00490 908 PRINTS DNA photolyase signature 332 348 IPR002081 -
Bda03g00490 908 PRINTS DNA photolyase signature 352 370 IPR002081 -
Bda03g00490 908 PRINTS DNA photolyase signature 391 405 IPR002081 -
Bda03g00490 908 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Bda03g00490 908 SMART LRR_sd22_2 755 776 - -
Bda03g00490 908 SMART LRR_sd22_2 777 798 - -
Bda03g00490 908 SMART LRR_sd22_2 737 754 - -
Bda03g00490 908 Gene3D - 134 293 - -
Bda03g00490 908 Pfam FAD binding domain of DNA photolyase 283 419 IPR005101 -
Bda03g00490 908 SUPERFAMILY Outer arm dynein light chain 1 683 845 - -
Bda03g00490 908 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 420 IPR014134 GO:0009785|GO:0009882
Bda03g00490 908 ProSiteProfiles Leucine-rich repeat profile. 757 778 IPR001611 GO:0005515
Bda03g00490 908 Gene3D Ribonuclease Inhibitor 653 754 IPR032675 -
Bda03g00490 908 PANTHER CRYPTOCHROME 1 419 IPR002081 -
Bda03g00490 908 ProSiteProfiles Leucine-rich repeat profile. 779 800 IPR001611 GO:0005515
Bda03g00490 908 ProSiteProfiles Leucine-rich repeat profile. 717 738 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00490 K12118 CRY1; cryptochrome 1 - jre:109007373 804.283
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00490 Bda11g00767 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02047 Bda-Chr1:56740313 Bda03g00490 Bda-Chr3:4196127 2.64E-09 dispersed
Bda03g00490 Bda-Chr3:4196127 Bda13g00064 Bda-Chr13:883157 0 dispersed
Bda11g00767 Bda-Chr11:7737691 Bda03g00490 Bda-Chr3:4196127 1.20E-63 transposed
Bda11g01807 Bda-Chr11:53110413 Bda03g00490 Bda-Chr3:4196127 8.44E-06 transposed
Bda14g00722 Bda-Chr14:5466039 Bda03g00490 Bda-Chr3:4196127 4.61E-64 transposed
Bda11g00766 Bda-Chr11:7723238 Bda03g00490 Bda-Chr3:4196127 9.04E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g415 . . . Bda03g00490 Bpe02g00110 Bpe04g00445 . . . . Cma01g01609 Cma09g00558 Car01g01227 . . Cpe06g00424 . . . . . . . . . . . . . . . Cone4ag1333 Cone7ag1596 Cone17ag1215 Cone20ag0510 Lsi04g02236 Csa03g04447 Chy04g00253 . . . Bda11g00767 . . . . . Sed05g1600 Cmo01g01655 Cmo09g00548 . . . Car09g00489 . Cpe02g00371 Bhi09g02438 Tan01g3790 Cmetu12g0935 . Hepe01g2129 Mch11g0667 . Cla11g01383 Cam11g1441 Cec11g1467 Cco11g1463 Clacu11g1598 Cmu11g1417 Cre11g1837 . . . Cme04g00283
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005916 1 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00490 Bda_Chr03 FPKM 5.397504 6.268708 7.216701 6.343424 5.345057 5.601843 6.224838 7.124519 6.272704