Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00496 ATGGCGAATTTCGTTGTAAAGAATGACTCGGGCTGCGGATTCATATCGGGGGTCTTCTATCGTCGATGCAAGTGGCCGAAAAAATCCACGGTGTACTCACTTCCGACGACTAAGAACTCGGAGGAGAAGAATTGTGAAAATTCCCACAAACCGGCTAGAGTTTCCGCAGCAGAAACGGAGAAGAAAACGATTGTTAATAAGGCTGTTGCTGACCAGTCAAAGCCATTGAGCTCTCAGAGAAATCATCAACCACGGCGTCTTTCCGATGCCGCTGCCAGAAGCTCGACATCATCGTCCTCCACTAATTCAACCCAAGCTAAGGCGATTCAAAGCAAACCTCCGGCTCCAAGCCACTTAGGAAACTTGATACAGGGCGGAAATGGCAGTCTGTCGACGGGCAATACTCCCAGAGCCTCAAATAGAGAGGTTATCAACTCTCTGCCTAAACTAAGTGGCAGTGGAAACATGGGGAACATTTTTGGCCAATCTCAAGGTCTTCGAAGTAGAATAGACCCTGATGCTTTGAAATGCATGGGAAATGAGGCTTACAATCTGGGTAGATTCGAGGAGGCTTTGAATTTGTATGACCGAGCCATAGCTTTGGACTCTGAAAATGCCGTCTATCACTGCAATAAGAGCGCCGCTCTGATGAGCTTAGACCGTCTAATGGAGGCTATCGAGGAATGCCGGCTGGCAATTCTGATTCACCCTTCTTACTGCAGAGCTCATCATCGATTGGCCGCGTTGTGGCTCAGACTGGGAGAAACAGAGAAAGCGATATATCACTTCAAAGAATCAGGCGACCGGACTGAAGATAAAGACATTGACAAAACACGTGCGCTTCAAAATTTCCTGTGTAGGTGCAGTGAAGCCAGAAGATCAAAAGATTGGAACGGCTTGTTGAAGGAGACCCAGTCAGCGATTTCCGTCGGAGCGAAATCATCTCATAAGGTGTATGCTCTGCAATCCGAGGCCTTACTAAGGCTTCAACGGCATCAAGAGGCTTACGCAGCCTACCAGACGAGTCGAAATCTGAGAAATGAGTTCGCCAGGTTAATCGACGCGGCGGATACATCCTATCCTTTAATGATCGAAGCTCAGGTTTACTTGACAATGGGCAGGAATCAATGTCGTGAACAACTTTTGTCGTTTGGCAGATTTGAGGAGGCAGTGGCAGCTGCGCAACAAGCGTTGGAAATCGATCCAATCAGCGCGGAGATTGGGGCGGTGGCGAAGAGGGCCAGAGCTATTTCGTCGGCTCGGTCCAGCGGCAATCTACTGTTTAGAGCGTCGAGATTCTCCGAAGCATGCGTTGCATATAGCGAAGGACTAGAGATGGACCCATATAACTCGGTTTTGCTATGCAACAGAGCAACGTGTCGGTCAAAGCTTGGCCAATTCGAGAAGGCTATCGAGGATTGCTCTGCGGCTCTTCGTGTTCAACCTTCCTACAGCAAAGCCAGGCTTCGCAGGGCAGTTGTAATGCTAAAGTGGTTGGAGAGATGGGAGGCTTCGGTTCAGGACTATGAAGTGCTGCTGAGGGAGATGCCGGCCAATGAGGAAGTGGGGAGGGCTCTGTTTGAAGTGCAAGTGCAGCTGAAGAAACAGCGAGGGGAAGATGTCAAGGACATGAAATTTGGATCCAATTTGGTGTCTGTTTCAAGCACTGATCGTTTCAGACACTTCATTACATCTCCTGGGATGTCAGTGGTGCTTTTCTGCAAAAAACAGACCCATATAAAAGAGCTGCGAGTCATAGAGAAAGTCTGCCATAGATTCCCATCTGTAAGCTTCCTCCAGGTAGAGATAGAGGACCATCCTTTCTTGGCAAAATCAGAGGGAATAAGCTCAATCCCAGCCTTCAAAATATACAAAAATGGATCCAGCGTCCAGGAATTTCTGGCTACCAACCCAGAATCATTAGAAAGCTGTATCAGATTGTACAGTAGTTGA 1953 48.18 MANFVVKNDSGCGFISGVFYRRCKWPKKSTVYSLPTTKNSEEKNCENSHKPARVSAAETEKKTIVNKAVADQSKPLSSQRNHQPRRLSDAAARSSTSSSSTNSTQAKAIQSKPPAPSHLGNLIQGGNGSLSTGNTPRASNREVINSLPKLSGSGNMGNIFGQSQGLRSRIDPDALKCMGNEAYNLGRFEEALNLYDRAIALDSENAVYHCNKSAALMSLDRLMEAIEECRLAILIHPSYCRAHHRLAALWLRLGETEKAIYHFKESGDRTEDKDIDKTRALQNFLCRCSEARRSKDWNGLLKETQSAISVGAKSSHKVYALQSEALLRLQRHQEAYAAYQTSRNLRNEFARLIDAADTSYPLMIEAQVYLTMGRNQCREQLLSFGRFEEAVAAAQQALEIDPISAEIGAVAKRARAISSARSSGNLLFRASRFSEACVAYSEGLEMDPYNSVLLCNRATCRSKLGQFEKAIEDCSAALRVQPSYSKARLRRAVVMLKWLERWEASVQDYEVLLREMPANEEVGRALFEVQVQLKKQRGEDVKDMKFGSNLVSVSSTDRFRHFITSPGMSVVLFCKKQTHIKELRVIEKVCHRFPSVSFLQVEIEDHPFLAKSEGISSIPAFKIYKNGSSVQEFLATNPESLESCIRLYSS 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4230751 4233074 + Bda016465.1 Bda03g00496 3755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00496 650 Pfam Thioredoxin 585 645 IPR013766 -
Bda03g00496 650 Gene3D Glutaredoxin 542 649 - -
Bda03g00496 650 ProSiteProfiles TPR repeat profile. 172 205 IPR019734 GO:0005515
Bda03g00496 650 MobiDBLite consensus disorder prediction 42 57 - -
Bda03g00496 650 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 96 647 - -
Bda03g00496 650 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 5 105 - -
Bda03g00496 650 MobiDBLite consensus disorder prediction 122 139 - -
Bda03g00496 650 CDD TRX_family 559 640 - -
Bda03g00496 650 SUPERFAMILY TPR-like 422 536 IPR011990 GO:0005515
Bda03g00496 650 SMART tpr_5 240 273 IPR019734 GO:0005515
Bda03g00496 650 SMART tpr_5 316 349 IPR019734 GO:0005515
Bda03g00496 650 SMART tpr_5 172 205 IPR019734 GO:0005515
Bda03g00496 650 SMART tpr_5 206 239 IPR019734 GO:0005515
Bda03g00496 650 SMART tpr_5 366 404 IPR019734 GO:0005515
Bda03g00496 650 SMART tpr_5 451 484 IPR019734 GO:0005515
Bda03g00496 650 SMART tpr_5 417 450 IPR019734 GO:0005515
Bda03g00496 650 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 96 647 IPR044534 -
Bda03g00496 650 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 5 105 IPR044534 -
Bda03g00496 650 Pfam TPR repeat 179 215 - -
Bda03g00496 650 Pfam Tetratricopeptide repeat 384 402 IPR019734 GO:0005515
Bda03g00496 650 SUPERFAMILY TPR-like 172 402 IPR011990 GO:0005515
Bda03g00496 650 SUPERFAMILY Thioredoxin-like 550 636 IPR036249 -
Bda03g00496 650 Gene3D Tetratricopeptide repeat domain 171 538 IPR011990 GO:0005515
Bda03g00496 650 MobiDBLite consensus disorder prediction 37 139 - -
Bda03g00496 650 MobiDBLite consensus disorder prediction 70 111 - -
Bda03g00496 650 Pfam Tetratricopeptide repeat 453 484 IPR001440 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00496 K09527 DNAJC7; DnaJ homolog subfamily C member 7 - csv:101206173 644.039
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00496 Bda11g00760 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00496 Bda-Chr3:4230751 Bda09g00529 Bda-Chr9:6969816 1.36E-129 dispersed
Bda11g00760 Bda-Chr11:7663267 Bda03g00496 Bda-Chr3:4230751 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00496 Bda_Chr03 FPKM 8.197531 7.051883 1.116178 1.206451 0.373412 0.0 1.05638 0.232355 1.245195