Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00498 ATGGCAGGTGCAATGGATCTACACAGTTTTACAGCTTCTCTATCAGATCCCTATGGAGGTGAGCTAATGGAAGCTCTTGGACCTTATATCAAAAGTGCTTCTTCTCCTCCATCTACCTCTTTTTCTTCTTCTCCTTTTACTTCTCTTCCTCAAAACTGTTTCTCTTTCTCCCCTTCCCTCCCATCAATGGACTTTTTCGATACAAATGGTTGCTCTGGTTCGACGAACTCTGTAGTTTTAGACGAGTTCTCAACCCAACCTTTTCTTAATTTGGAGCAGCCATGGCCAATTGGCCTAAACCAACTTACCCCATCTCAGATCTACCAGATCCAAGCTCAGATCCAGCAGAATTACTCTCCATATCTTGATTTCGAACGGACCCACCAGCATATATACTCCAGTCATAGTAAGCTAAACTTCCTTGGTCCGAAACGCATTGAAATGAAGCAAGTGGGTTCCCCATTAAAGCCGACGAAGCTTTACAGAGGAGTTAGACAGAGGCACTGGGGGAAATGGGTAGCTGAGATTCGTCTCCCGAGGAATCGAACTCGGCTATGGCTTGGCACCTTCGATACGGCAATAGAAGCCGCGTTAGCTTACGACCAAGCTGCTTACAAGCTCAGAGGCGATTTCGCGAGGCTTAATTTTCCAAATCTGAAGCACAAAGGCGAATTAGGCGAGTATAAGCCTCTCCATTCCTCCATTGATGCGAAGCTCCAAGCAATTTGCCAAAGCTTGGCTGAATCGCAGAAACAGGGGAAAACAGAGAAGCCTCGCACTGCCAGAAAAGCGCAAAAGGTCCAAGTGCAGCCGCCGGTGGACGAAGTGCAGTCGAAAGAAACAGAGATCAACAATCAGGTGGGAAACTCCCCGTCGCCGGCGATAACAGACAGCGACGGGTCAGCAGGATCTTCACCTTTGTCAGATCTGACGTTTCCGGACATAACAGAGTCCCCATGGGAGCAGTTTGCGGAGAATTTCGCGTTGCAGAAATACCCTTCTGAGATTGATTGGGCAGCCATCCTATCTTCCTAA 1035 47.83 MAGAMDLHSFTASLSDPYGGELMEALGPYIKSASSPPSTSFSSSPFTSLPQNCFSFSPSLPSMDFFDTNGCSGSTNSVVLDEFSTQPFLNLEQPWPIGLNQLTPSQIYQIQAQIQQNYSPYLDFERTHQHIYSSHSKLNFLGPKRIEMKQVGSPLKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAIEAALAYDQAAYKLRGDFARLNFPNLKHKGELGEYKPLHSSIDAKLQAICQSLAESQKQGKTEKPRTARKAQKVQVQPPVDEVQSKETEINNQVGNSPSPAITDSDGSAGSSPLSDLTFPDITESPWEQFAENFALQKYPSEIDWAAILSS 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4235216 4236250 - Bda016467.1 Bda03g00498 3757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00498 344 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Bda03g00498 344 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Bda03g00498 344 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 340 - -
Bda03g00498 344 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700|GO:0006355
Bda03g00498 344 CDD AP2 159 219 IPR001471 GO:0003700|GO:0006355
Bda03g00498 344 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Bda03g00498 344 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 340 - -
Bda03g00498 344 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
Bda03g00498 344 SUPERFAMILY DNA-binding domain 160 217 IPR016177 GO:0003677
Bda03g00498 344 MobiDBLite consensus disorder prediction 249 315 - -
Bda03g00498 344 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Bda03g00498 344 MobiDBLite consensus disorder prediction 271 312 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00877 Bda03g00498 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00498 Bda-Chr3:4235216 Bda14g00749 Bda-Chr14:5720143 6.28E-32 dispersed
Bda06g00142 Bda-Chr6:2132460 Bda03g00498 Bda-Chr3:4235216 6.87E-27 dispersed
Bda07g00459 Bda-Chr7:5906577 Bda03g00498 Bda-Chr3:4235216 1.64E-26 dispersed
Bda15g00305 Bda-Chr15:5872633 Bda03g00498 Bda-Chr3:4235216 1.80E-24 dispersed
Bda10g00094 Bda-Chr10:2231249 Bda03g00498 Bda-Chr3:4235216 2.89E-69 transposed
Bda01g00877 Bda-Chr1:41669531 Bda03g00498 Bda-Chr3:4235216 4.79E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15657 PF00847 AP2 8.50E-15 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00498 K09286 - twl:120009478 344.354