Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00501 ATGAATGCAAATTTAGAGAAATCTCCTTCAAATGGTTGTGAGAATCATGTCTCATCTGAAGAACAGCTACAGAAGATTTATGAGATTAGAAGGCTGTTAGGGCCTTTGTCGGGTCAGTTTTCTGTTTATTGTTCTGATGCATCCATTTCGAGATACCTAAGGGCCAGAAACTGGAATGTCAAGAAAGCAGCAAAAATGCTAAAAGAATCATTAAAATGGCGGTCACAGTTCAAGCCAGAAGAGATTAAATGGGAAGATGTTGCCCATGAAGCAGAGACAGGAAAAATTTACAGGACGAATTACATTGACAAACATGGGAGAACGGTTCTAGTGATGAGGCCAAGTCGTCAGAACTCAAAGAGCATAAAAGGGCAGATAAAGTATTTGGTGTATTGCATGGAGAACGCTATTTTGAATCTGGCTTCAGACCAAGAACAGATGGTCTGGCTGATTGATTTTCAAGGCTTCAATTTGTCCAATATTTCTGTGAAGGTTACACGAGAAACTGCTAATGTTTTACAAAATCATTATCCAGAACGTCTTGGTAATGCAATACTATACAATCCACCAAAGTTCTTCGAGCCATTTTGGACGGTGGTGAAGCCATTTCTAGAACCAAAGACTGTAAACAAAGTTAAATTCGTCTACTCTGATGATCTTAACTCTCAGAAGGTGATGGAGGATCTTTTTGAGATGGAGAAGCTGGAATCTGCATTCGGTGGAACGGATCCTACAGGTTTTGAGATAACCAAATATGCCGAGAGGATGAGAGAAGACGACAAAAAGATGCCTGCTTTCTGGACAAAATCAAGCCCCCCGTTGTCAACCTCGGAGCAACCCATGCTTAGTGCTCCTCTCGAGTCTCTCGATCTAGACTCAAGCTCTGATTCTTCTGACAATGACAAAACAGATTGCGACCCATCCGATAAAATTGCAACAGAAGAAGATCTCTCCCCAGAGCACGATACGATCATTGCGATTGGCAATGGCGGAAGCAGTGGCGCTAACTGA 1011 41.94 MNANLEKSPSNGCENHVSSEEQLQKIYEIRRLLGPLSGQFSVYCSDASISRYLRARNWNVKKAAKMLKESLKWRSQFKPEEIKWEDVAHEAETGKIYRTNYIDKHGRTVLVMRPSRQNSKSIKGQIKYLVYCMENAILNLASDQEQMVWLIDFQGFNLSNISVKVTRETANVLQNHYPERLGNAILYNPPKFFEPFWTVVKPFLEPKTVNKVKFVYSDDLNSQKVMEDLFEMEKLESAFGGTDPTGFEITKYAERMREDDKKMPAFWTKSSPPLSTSEQPMLSAPLESLDLDSSSDSSDNDKTDCDPSDKIATEEDLSPEHDTIIAIGNGGSSGAN 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4262995 4265363 + Bda016470.1 Bda03g00501 3760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00501 336 Gene3D - 3 283 IPR036865 -
Bda03g00501 336 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
Bda03g00501 336 SUPERFAMILY CRAL/TRIO domain 84 265 IPR036865 -
Bda03g00501 336 SMART sec14_4 90 244 IPR001251 -
Bda03g00501 336 CDD SEC14 92 242 IPR001251 -
Bda03g00501 336 Pfam CRAL/TRIO, N-terminal domain 45 69 IPR011074 -
Bda03g00501 336 PANTHER GH16843P 1 306 - -
Bda03g00501 336 MobiDBLite consensus disorder prediction 263 336 - -
Bda03g00501 336 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 84 247 IPR001251 -
Bda03g00501 336 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 1 306 - -
Bda03g00501 336 Pfam CRAL/TRIO domain 92 241 IPR001251 -
Bda03g00501 336 MobiDBLite consensus disorder prediction 295 321 - -
Bda03g00501 336 MobiDBLite consensus disorder prediction 269 293 - -
Bda03g00501 336 SUPERFAMILY CRAL/TRIO N-terminal domain 19 86 IPR036273 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00501 - - - jre:109012463 466.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00501 Bda-Chr3:4262995 Bda04g00051 Bda-Chr4:836679 3.19E-88 dispersed
Bda03g00501 Bda-Chr3:4262995 Bda11g01871 Bda-Chr11:53763472 1.44E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g55 . . . Bda03g00501 . . . . . . . . . . Sed03g2096 . . Bhi03g02369 Tan03g0569 Cmetu08g0790 . Hepe04g0579 . . Cla04g00493 Cam04g0482 Cec04g0595 Cco04g0647 Clacu04g0521 Cmu04g0527 Cre04g0586 . . . . . . . . . . . . Bpe04g00456 Bpe02g00096 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g381 . . . Bda03g00501 Bpe02g00096 Bpe04g00456 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1579 . . . Csa04g01845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011765 1 3 0 0 2 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 3 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00501 Bda_Chr03 FPKM 39.369255 43.609413 10.401769 11.303553 17.014818 16.336809 13.476636 8.89013 7.425969