Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00506 ATGGGAGTCGCAGGGACCTTAGAATACTTCTCCATTCTGCTTAGCAAATTGAAAAAGAGAAAGAAACTGAAGCAAATTCAAACTGTAGCTCTTAAAGTAAGGATGGACTGCGAGGGCTGCGAACGAAAAATTAAAAGCGTCCTCTCTAGTGGGTTAAATCGGTGGACGTTCGATTTGAAGCAGCAGAAGGTGACGGTGAGTGGATATATAGAGGGGAAGAAAGTGTTGAAAGCAGCAGAAAAGACGAAGAAGAAGGTGGAGATGTGGCCTTACGTTCCATACACAATGGTCGCTAATCCTTACGTTTCTCAAGCTTATGATAAGAAGGCTCCTCCTAACATGGTTCGAAGCCTTCCCGACTCTGTAGCTATAACTGAAACCACCATGGACGACCACTACACCACCCTGTTCAGCGATGAAAACCCTAATTCCTGCTCCATCATGTAA 447 44.74 MGVAGTLEYFSILLSKLKKRKKLKQIQTVALKVRMDCEGCERKIKSVLSSGLNRWTFDLKQQKVTVSGYIEGKKVLKAAEKTKKKVEMWPYVPYTMVANPYVSQAYDKKAPPNMVRSLPDSVAITETTMDDHYTTLFSDENPNSCSIM 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4282278 4282878 - Bda016475.1 Bda03g00506 3765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00506 148 CDD HMA 35 87 IPR006121 GO:0046872
Bda03g00506 148 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 24 3 148 - -
Bda03g00506 148 SUPERFAMILY HMA, heavy metal-associated domain 26 90 IPR036163 GO:0046872
Bda03g00506 148 Pfam Heavy-metal-associated domain 32 85 IPR006121 GO:0046872
Bda03g00506 148 Gene3D - 23 88 - -
Bda03g00506 148 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 3 148 IPR045181 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00506 - - - qsu:111988820 211.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00506 Bda-Chr3:4282278 Bda13g01509 Bda-Chr13:38156856 1.80E-70 dispersed
Bda01g01401 Bda-Chr1:49931965 Bda03g00506 Bda-Chr3:4282278 3.34E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g363 . . . Bda03g00506 . Bpe04g00461 . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1355 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000681 5 3 2 3 4 3 4 3 3 3 3 3 4 3 3 3 3 4 4 3 3 3 3 3 3 3 3 6 3 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00506 Bda_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 2.937318 0.0 0.0